Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01708 and SMc01707 are separated by 8 nucleotides SMc01707 and SMc01706 are separated by 109 nucleotides SMc01706 and SMc01705 are separated by 36 nucleotides SMc01705 and SMc01704 are separated by 184 nucleotides
SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311
SMc01708
SMc01707: SMc01707 - signal peptide protein, at 506,320 to 506,889
SMc01707
SMc01706: SMc01706 - signal peptide protein, at 506,999 to 507,574
SMc01706
SMc01705: SMc01705 - hypothetical protein, at 507,611 to 508,081
SMc01705
SMc01704: SMc01704 - hypothetical protein, at 508,266 to 508,943
SMc01704
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.027 kb on + strand at 506.027 kb on + strand at 506.414 kb on - strand, within SMc01707 at 506.882 kb on + strand at 506.883 kb on - strand at 506.887 kb on + strand at 506.887 kb on + strand at 506.887 kb on + strand at 506.888 kb on - strand at 506.888 kb on - strand at 507.057 kb on - strand, within SMc01706 at 507.156 kb on + strand, within SMc01706 at 507.157 kb on - strand, within SMc01706 at 507.157 kb on - strand, within SMc01706 at 507.231 kb on - strand, within SMc01706 at 507.274 kb on + strand, within SMc01706 at 507.274 kb on + strand, within SMc01706 at 507.275 kb on - strand, within SMc01706 at 507.302 kb on + strand, within SMc01706 at 507.302 kb on + strand, within SMc01706 at 507.303 kb on - strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.482 kb on + strand, within SMc01706 at 507.483 kb on - strand at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.483 kb on - strand, within SMc01706 at 507.583 kb on - strand at 507.680 kb on - strand, within SMc01705 at 507.715 kb on - strand, within SMc01705 at 507.718 kb on + strand, within SMc01705 at 507.719 kb on - strand, within SMc01705 at 507.765 kb on + strand, within SMc01705 at 508.006 kb on + strand, within SMc01705 at 508.029 kb on + strand, within SMc01705 at 508.051 kb on + strand at 508.051 kb on + strand at 508.052 kb on - strand at 508.052 kb on - strand at 508.054 kb on - strand at 508.054 kb on - strand at 508.054 kb on - strand at 508.084 kb on + strand at 508.085 kb on - strand at 508.097 kb on + strand at 508.098 kb on - strand at 508.160 kb on + strand at 508.161 kb on - strand at 508.161 kb on - strand at 508.161 kb on - strand at 508.200 kb on + strand at 508.201 kb on - strand at 508.309 kb on + strand at 508.354 kb on - strand, within SMc01704 at 508.460 kb on + strand, within SMc01704 at 508.461 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.463 kb on - strand, within SMc01704 at 508.480 kb on + strand, within SMc01704 at 508.481 kb on - strand, within SMc01704
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 506,027 + -1.0 506,027 + -0.3 506,414 - SMc01707 0.16 +1.3 506,882 + +0.2 506,883 - -1.1 506,887 + +0.4 506,887 + -0.8 506,887 + -2.3 506,888 - -0.2 506,888 - +0.4 507,057 - SMc01706 0.10 +0.7 507,156 + SMc01706 0.27 -0.7 507,157 - SMc01706 0.27 +0.4 507,157 - SMc01706 0.27 +0.2 507,231 - SMc01706 0.40 +1.3 507,274 + SMc01706 0.48 -0.0 507,274 + SMc01706 0.48 +1.4 507,275 - SMc01706 0.48 +0.1 507,302 + SMc01706 0.53 +1.2 507,302 + SMc01706 0.53 +0.6 507,303 - SMc01706 0.53 +2.3 507,482 + SMc01706 0.84 +0.4 507,482 + SMc01706 0.84 -2.4 507,482 + SMc01706 0.84 +0.6 507,483 - +0.3 507,483 - SMc01706 0.84 +1.9 507,483 - SMc01706 0.84 +0.2 507,483 - SMc01706 0.84 +1.6 507,483 - SMc01706 0.84 +0.8 507,583 - +0.9 507,680 - SMc01705 0.15 +1.4 507,715 - SMc01705 0.22 +0.6 507,718 + SMc01705 0.23 +0.7 507,719 - SMc01705 0.23 +0.9 507,765 + SMc01705 0.33 -2.8 508,006 + SMc01705 0.84 +0.0 508,029 + SMc01705 0.89 -1.2 508,051 + +0.4 508,051 + +0.2 508,052 - -0.4 508,052 - -0.3 508,054 - -1.1 508,054 - -1.0 508,054 - +1.2 508,084 + -1.8 508,085 - +0.2 508,097 + +1.6 508,098 - -0.5 508,160 + -1.2 508,161 - +3.2 508,161 - +1.9 508,161 - -0.1 508,200 + +0.2 508,201 - -0.0 508,309 + +0.9 508,354 - SMc01704 0.13 -0.4 508,460 + SMc01704 0.29 +0.6 508,461 - SMc01704 0.29 -1.1 508,463 - SMc01704 0.29 +0.2 508,463 - SMc01704 0.29 +0.2 508,463 - SMc01704 0.29 -0.1 508,480 + SMc01704 0.32 -1.2 508,481 - SMc01704 0.32 -2.9
Or see this region's nucleotide sequence