Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01133 and SMc01132 are separated by 27 nucleotides SMc01132 and SMc01131 are separated by 172 nucleotides SMc01131 and SMc01130 overlap by 4 nucleotides SMc01130 and SMc01129 overlap by 4 nucleotides
SMc01133: SMc01133 - hypothetical protein, at 416,966 to 417,310
SMc01133
SMc01132: SMc01132 - hypothetical protein, at 417,338 to 417,796
SMc01132
SMc01131: SMc01131 - hypothetical protein, at 417,969 to 419,123
SMc01131
SMc01130: SMc01130 - tRNA/rRNA methyltransferase, at 419,120 to 419,986
SMc01130
SMc01129: SMc01129 - lipoprotein signal peptidase, at 419,983 to 420,483
SMc01129
Position (kb) 417
418
419
420 Strain fitness (log2 ratio) -1
0
1
2
3 at 416.986 kb on + strand at 417.509 kb on + strand, within SMc01132 at 417.545 kb on + strand, within SMc01132 at 417.576 kb on + strand, within SMc01132 at 417.577 kb on - strand, within SMc01132 at 417.773 kb on - strand at 417.790 kb on + strand at 417.790 kb on + strand at 417.791 kb on - strand at 417.870 kb on + strand at 417.870 kb on + strand at 417.890 kb on + strand at 417.890 kb on + strand at 417.890 kb on + strand at 418.372 kb on + strand, within SMc01131 at 418.372 kb on + strand, within SMc01131 at 418.617 kb on + strand, within SMc01131 at 418.619 kb on + strand, within SMc01131
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 416,986 + +0.3 417,509 + SMc01132 0.37 +0.3 417,545 + SMc01132 0.45 +0.3 417,576 + SMc01132 0.52 -0.4 417,577 - SMc01132 0.52 -0.1 417,773 - +0.5 417,790 + +0.0 417,790 + +0.4 417,791 - +0.0 417,870 + +1.0 417,870 + -0.2 417,890 + +1.3 417,890 + +0.1 417,890 + +0.1 418,372 + SMc01131 0.35 -0.5 418,372 + SMc01131 0.35 +0.0 418,617 + SMc01131 0.56 +0.7 418,619 + SMc01131 0.56 +3.7
Or see this region's nucleotide sequence