Strain Fitness in Sinorhizobium meliloti 1021 around SMc00718

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00720 and SMc00719 are separated by 225 nucleotidesSMc00719 and SMc00718 are separated by 63 nucleotidesSMc00718 and SMc00717 are separated by 364 nucleotides SMc00720: SMc00720 - 2-component receiver domain-containing protein, at 2,861,678 to 2,862,037 SMc00720 SMc00719: SMc00719 - hypoxanthine-guanine phosphoribosyltransferase, at 2,862,263 to 2,862,808 SMc00719 SMc00718: SMc00718 - hypothetical protein, at 2,862,872 to 2,863,312 SMc00718 SMc00717: SMc00717 - ABC transporter ATP-binding protein, at 2,863,677 to 2,864,360 SMc00717 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1 2at 2862.139 kb on + strandat 2862.186 kb on + strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.253 kb on - strandat 2862.264 kb on + strandat 2862.264 kb on + strandat 2862.315 kb on + strandat 2862.588 kb on + strand, within SMc00719at 2862.706 kb on + strand, within SMc00719at 2862.707 kb on - strand, within SMc00719at 2862.771 kb on + strandat 2862.772 kb on - strandat 2862.784 kb on + strandat 2862.785 kb on - strandat 2862.855 kb on - strandat 2862.864 kb on + strandat 2863.000 kb on + strand, within SMc00718at 2863.203 kb on - strand, within SMc00718at 2863.216 kb on + strand, within SMc00718at 2863.218 kb on + strand, within SMc00718at 2863.359 kb on - strandat 2863.501 kb on - strandat 2863.506 kb on + strandat 2863.507 kb on - strandat 2863.626 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,862,139 + +2.3
2,862,186 + +0.6
2,862,187 - -1.0
2,862,187 - -1.0
2,862,187 - -1.2
2,862,187 - +2.2
2,862,253 - +0.6
2,862,264 + +2.0
2,862,264 + +1.3
2,862,315 + -0.2
2,862,588 + SMc00719 0.60 +0.2
2,862,706 + SMc00719 0.81 -0.5
2,862,707 - SMc00719 0.81 +1.0
2,862,771 + +1.0
2,862,772 - +1.1
2,862,784 + -1.9
2,862,785 - -0.0
2,862,855 - +0.1
2,862,864 + -0.0
2,863,000 + SMc00718 0.29 +0.5
2,863,203 - SMc00718 0.75 -0.0
2,863,216 + SMc00718 0.78 -0.1
2,863,218 + SMc00718 0.78 +1.0
2,863,359 - +0.2
2,863,501 - -0.4
2,863,506 + -0.3
2,863,507 - -0.5
2,863,626 + -1.1

Or see this region's nucleotide sequence