Strain Fitness in Sinorhizobium meliloti 1021 around SMc00013

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00450 and SMc00130 overlap by 1 nucleotidesSMc00130 and SMc00012 are separated by 11 nucleotidesSMc00012 and SMc00013 are separated by 61 nucleotidesSMc00013 and SMc00014 are separated by 194 nucleotidesSMc00014 and SMc00085 are separated by 7 nucleotides SMc00450: SMc00450 - protoheme IX farnesyltransferase, at 994,627 to 995,679 SMc00450 SMc00130: SMc00130 - hypothetical protein, at 995,679 to 995,819 SMc00130 SMc00012: SMc00012 - cytochrome C oxidase assembly protein, at 995,831 to 996,427 SMc00012 SMc00013: SMc00013 - cytochrome C oxidase subunit III transmembrane protein, at 996,489 to 997,367 SMc00013 SMc00014: SMc00014 - hypothetical protein, at 997,562 to 997,945 SMc00014 SMc00085: SMc00085 - cytochrome oxidase complex biogenesis factor transmembrane protein, at 997,953 to 998,681 SMc00085 Position (kb) 996 997 998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 995.927 kb on + strand, within SMc00012at 995.972 kb on + strand, within SMc00012at 996.321 kb on + strand, within SMc00012at 996.472 kb on + strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.519 kb on + strandat 996.520 kb on - strandat 996.607 kb on - strand, within SMc00013at 996.691 kb on - strand, within SMc00013at 997.092 kb on + strand, within SMc00013at 997.326 kb on + strandat 997.327 kb on - strandat 997.374 kb on + strandat 997.374 kb on + strandat 997.428 kb on - strandat 997.428 kb on - strandat 997.434 kb on + strandat 997.434 kb on + strandat 997.435 kb on - strandat 997.435 kb on - strandat 997.873 kb on + strand, within SMc00014at 998.247 kb on + strand, within SMc00085at 998.248 kb on - strand, within SMc00085at 998.265 kb on - strand, within SMc00085at 998.265 kb on - strand, within SMc00085

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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995,927 + SMc00012 0.16 -0.1
995,972 + SMc00012 0.24 -1.9
996,321 + SMc00012 0.82 -2.7
996,472 + -2.1
996,519 + +0.7
996,519 + -1.3
996,519 + -1.4
996,519 + -0.7
996,519 + -2.1
996,520 - +0.7
996,607 - SMc00013 0.13 -0.7
996,691 - SMc00013 0.23 -0.9
997,092 + SMc00013 0.69 -3.8
997,326 + +0.7
997,327 - -0.0
997,374 + -1.6
997,374 + +0.2
997,428 - -0.5
997,428 - -0.3
997,434 + +0.7
997,434 + +1.2
997,435 - +1.7
997,435 - +1.0
997,873 + SMc00014 0.81 +0.3
998,247 + SMc00085 0.40 -2.3
998,248 - SMc00085 0.40 -0.3
998,265 - SMc00085 0.43 -1.4
998,265 - SMc00085 0.43 -0.3

Or see this region's nucleotide sequence