Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2387 and SMa2389 are separated by 208 nucleotides SMa2389 and SMa2391 are separated by 304 nucleotides SMa2391 and SMa2393 are separated by 155 nucleotides
SMa2387: SMa2387 - TetR family transcriptional regulator, at 1,348,373 to 1,349,071
SMa2387
SMa2389: SMa2389 - OsmC-like protein, at 1,349,280 to 1,349,696
SMa2389
SMa2391: SMa2391 - replication initiation protein RepC, at 1,350,001 to 1,351,206
SMa2391
SMa2393: SMa2393 - RepB2 replication protein, at 1,351,362 to 1,352,363
SMa2393
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1349.198 kb on + strand at 1349.230 kb on - strand at 1349.238 kb on + strand at 1349.329 kb on + strand, within SMa2389 at 1349.489 kb on + strand, within SMa2389 at 1349.489 kb on + strand, within SMa2389 at 1349.490 kb on - strand, within SMa2389 at 1349.511 kb on + strand, within SMa2389 at 1349.522 kb on + strand, within SMa2389 at 1349.523 kb on - strand, within SMa2389 at 1349.654 kb on + strand, within SMa2389 at 1349.670 kb on - strand at 1349.671 kb on + strand at 1349.759 kb on + strand at 1349.759 kb on + strand at 1349.759 kb on + strand at 1349.760 kb on - strand at 1349.805 kb on + strand at 1349.806 kb on - strand at 1349.806 kb on - strand at 1349.824 kb on + strand at 1349.848 kb on + strand at 1349.953 kb on + strand at 1349.953 kb on + strand at 1349.953 kb on + strand at 1349.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,349,198 + -1.8 1,349,230 - +0.9 1,349,238 + -0.3 1,349,329 + SMa2389 0.12 -1.1 1,349,489 + SMa2389 0.50 -0.7 1,349,489 + SMa2389 0.50 -1.2 1,349,490 - SMa2389 0.50 -0.9 1,349,511 + SMa2389 0.55 -1.9 1,349,522 + SMa2389 0.58 -0.6 1,349,523 - SMa2389 0.58 +0.6 1,349,654 + SMa2389 0.90 +0.0 1,349,670 - -0.4 1,349,671 + -0.3 1,349,759 + -0.3 1,349,759 + -0.2 1,349,759 + -0.1 1,349,760 - +0.5 1,349,805 + +1.8 1,349,806 - -1.8 1,349,806 - -0.1 1,349,824 + +2.8 1,349,848 + -0.5 1,349,953 + -2.2 1,349,953 + -1.9 1,349,953 + +0.4 1,349,953 + -0.1
Or see this region's nucleotide sequence