Strain Fitness in Sinorhizobium meliloti 1021 around SMa1898

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1894 and SMa1896 are separated by 0 nucleotidesSMa1896 and SMa1898 are separated by 205 nucleotidesSMa1898 and SMa1900 are separated by 345 nucleotides SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323 SMa1894 SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830 SMa1896 SMa1898: SMa1898 - hypothetical protein, at 1,078,036 to 1,079,262 SMa1898 SMa1900: SMa1900 - hypothetical protein, at 1,079,608 to 1,080,165 SMa1900 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1at 1077.228 kb on + strand, within SMa1894at 1077.228 kb on + strand, within SMa1894at 1077.288 kb on + strandat 1077.417 kb on + strand, within SMa1896at 1077.447 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.607 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896at 1077.772 kb on - strand, within SMa1896at 1077.805 kb on + strandat 1077.853 kb on + strandat 1077.854 kb on - strandat 1077.943 kb on + strandat 1077.943 kb on + strandat 1078.003 kb on + strandat 1078.008 kb on + strandat 1078.009 kb on - strandat 1078.047 kb on + strandat 1078.319 kb on - strand, within SMa1898at 1078.333 kb on + strand, within SMa1898at 1078.421 kb on + strand, within SMa1898at 1078.539 kb on + strand, within SMa1898at 1078.641 kb on + strand, within SMa1898at 1078.789 kb on + strand, within SMa1898at 1078.790 kb on - strand, within SMa1898at 1078.922 kb on + strand, within SMa1898at 1079.005 kb on + strand, within SMa1898at 1079.006 kb on - strand, within SMa1898at 1079.073 kb on + strand, within SMa1898at 1079.074 kb on - strand, within SMa1898at 1079.244 kb on - strandat 1079.285 kb on + strandat 1079.662 kb on - strandat 1079.682 kb on - strand, within SMa1900at 1079.846 kb on + strand, within SMa1900at 1079.846 kb on + strand, within SMa1900at 1079.846 kb on + strand, within SMa1900at 1079.846 kb on + strand, within SMa1900at 1079.847 kb on - strand, within SMa1900at 1079.937 kb on + strand, within SMa1900at 1079.938 kb on - strand, within SMa1900at 1079.982 kb on + strand, within SMa1900at 1080.029 kb on - strand, within SMa1900at 1080.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,077,228 + SMa1894 0.78 +0.3
1,077,228 + SMa1894 0.78 -2.0
1,077,288 + +0.6
1,077,417 + SMa1896 0.18 -1.8
1,077,447 + SMa1896 0.24 +0.0
1,077,591 + SMa1896 0.53 -0.8
1,077,591 + SMa1896 0.53 +0.2
1,077,606 + SMa1896 0.56 -1.6
1,077,606 + SMa1896 0.56 +0.1
1,077,606 + SMa1896 0.56 -0.4
1,077,606 + SMa1896 0.56 +0.1
1,077,607 - SMa1896 0.56 +1.4
1,077,748 - SMa1896 0.84 +0.4
1,077,748 - SMa1896 0.84 +1.0
1,077,772 - SMa1896 0.88 -1.4
1,077,805 + +0.4
1,077,853 + +1.7
1,077,854 - -0.4
1,077,943 + -1.3
1,077,943 + +1.7
1,078,003 + +0.1
1,078,008 + -1.8
1,078,009 - -0.2
1,078,047 + -0.6
1,078,319 - SMa1898 0.23 -0.6
1,078,333 + SMa1898 0.24 -0.1
1,078,421 + SMa1898 0.31 -1.3
1,078,539 + SMa1898 0.41 -1.2
1,078,641 + SMa1898 0.49 +0.3
1,078,789 + SMa1898 0.61 -1.2
1,078,790 - SMa1898 0.61 -0.3
1,078,922 + SMa1898 0.72 -1.9
1,079,005 + SMa1898 0.79 -0.4
1,079,006 - SMa1898 0.79 -1.1
1,079,073 + SMa1898 0.85 +0.0
1,079,074 - SMa1898 0.85 -2.1
1,079,244 - -0.2
1,079,285 + +0.6
1,079,662 - -0.2
1,079,682 - SMa1900 0.13 -0.2
1,079,846 + SMa1900 0.43 +0.7
1,079,846 + SMa1900 0.43 +0.4
1,079,846 + SMa1900 0.43 -0.6
1,079,846 + SMa1900 0.43 -1.4
1,079,847 - SMa1900 0.43 +0.2
1,079,937 + SMa1900 0.59 -0.1
1,079,938 - SMa1900 0.59 +0.8
1,079,982 + SMa1900 0.67 +0.7
1,080,029 - SMa1900 0.75 +0.5
1,080,239 + +0.2

Or see this region's nucleotide sequence