Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1894 and SMa1896 are separated by 0 nucleotides SMa1896 and SMa1898 are separated by 205 nucleotides SMa1898 and SMa1900 are separated by 345 nucleotides
SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323
SMa1894
SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830
SMa1896
SMa1898: SMa1898 - hypothetical protein, at 1,078,036 to 1,079,262
SMa1898
SMa1900: SMa1900 - hypothetical protein, at 1,079,608 to 1,080,165
SMa1900
Position (kb)
1078
1079
1080 Strain fitness (log2 ratio)
-2
-1
0
1 at 1077.228 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.288 kb on + strand at 1077.417 kb on + strand, within SMa1896 at 1077.447 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.607 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.772 kb on - strand, within SMa1896 at 1077.805 kb on + strand at 1077.853 kb on + strand at 1077.854 kb on - strand at 1077.943 kb on + strand at 1077.943 kb on + strand at 1078.003 kb on + strand at 1078.008 kb on + strand at 1078.009 kb on - strand at 1078.047 kb on + strand at 1078.319 kb on - strand, within SMa1898 at 1078.333 kb on + strand, within SMa1898 at 1078.421 kb on + strand, within SMa1898 at 1078.539 kb on + strand, within SMa1898 at 1078.641 kb on + strand, within SMa1898 at 1078.789 kb on + strand, within SMa1898 at 1078.790 kb on - strand, within SMa1898 at 1078.922 kb on + strand, within SMa1898 at 1079.005 kb on + strand, within SMa1898 at 1079.006 kb on - strand, within SMa1898 at 1079.073 kb on + strand, within SMa1898 at 1079.074 kb on - strand, within SMa1898 at 1079.244 kb on - strand at 1079.285 kb on + strand at 1079.662 kb on - strand at 1079.682 kb on - strand, within SMa1900 at 1079.846 kb on + strand, within SMa1900 at 1079.846 kb on + strand, within SMa1900 at 1079.846 kb on + strand, within SMa1900 at 1079.846 kb on + strand, within SMa1900 at 1079.847 kb on - strand, within SMa1900 at 1079.937 kb on + strand, within SMa1900 at 1079.938 kb on - strand, within SMa1900 at 1079.982 kb on + strand, within SMa1900 at 1080.029 kb on - strand, within SMa1900 at 1080.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,077,228 + SMa1894 0.78 +0.3 1,077,228 + SMa1894 0.78 -2.0 1,077,288 + +0.6 1,077,417 + SMa1896 0.18 -1.8 1,077,447 + SMa1896 0.24 +0.0 1,077,591 + SMa1896 0.53 -0.8 1,077,591 + SMa1896 0.53 +0.2 1,077,606 + SMa1896 0.56 -1.6 1,077,606 + SMa1896 0.56 +0.1 1,077,606 + SMa1896 0.56 -0.4 1,077,606 + SMa1896 0.56 +0.1 1,077,607 - SMa1896 0.56 +1.4 1,077,748 - SMa1896 0.84 +0.4 1,077,748 - SMa1896 0.84 +1.0 1,077,772 - SMa1896 0.88 -1.4 1,077,805 + +0.4 1,077,853 + +1.7 1,077,854 - -0.4 1,077,943 + -1.3 1,077,943 + +1.7 1,078,003 + +0.1 1,078,008 + -1.8 1,078,009 - -0.2 1,078,047 + -0.6 1,078,319 - SMa1898 0.23 -0.6 1,078,333 + SMa1898 0.24 -0.1 1,078,421 + SMa1898 0.31 -1.3 1,078,539 + SMa1898 0.41 -1.2 1,078,641 + SMa1898 0.49 +0.3 1,078,789 + SMa1898 0.61 -1.2 1,078,790 - SMa1898 0.61 -0.3 1,078,922 + SMa1898 0.72 -1.9 1,079,005 + SMa1898 0.79 -0.4 1,079,006 - SMa1898 0.79 -1.1 1,079,073 + SMa1898 0.85 +0.0 1,079,074 - SMa1898 0.85 -2.1 1,079,244 - -0.2 1,079,285 + +0.6 1,079,662 - -0.2 1,079,682 - SMa1900 0.13 -0.2 1,079,846 + SMa1900 0.43 +0.7 1,079,846 + SMa1900 0.43 +0.4 1,079,846 + SMa1900 0.43 -0.6 1,079,846 + SMa1900 0.43 -1.4 1,079,847 - SMa1900 0.43 +0.2 1,079,937 + SMa1900 0.59 -0.1 1,079,938 - SMa1900 0.59 +0.8 1,079,982 + SMa1900 0.67 +0.7 1,080,029 - SMa1900 0.75 +0.5 1,080,239 + +0.2
Or see this region's nucleotide sequence