Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1548 and SMa1550 are separated by 190 nucleotides SMa1550 and SMa1552 are separated by 153 nucleotides
SMa1548: SMa1548 - Diguanylate cyclase/phosphodiesterase, at 854,222 to 857,437
SMa1548
SMa1550: SMa1550 - Response regulator, at 857,628 to 858,311
SMa1550
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.638 kb on - strand, within SMa1548 at 856.638 kb on - strand, within SMa1548 at 857.084 kb on - strand, within SMa1548 at 857.097 kb on + strand, within SMa1548 at 857.153 kb on + strand at 857.373 kb on - strand at 857.435 kb on + strand at 857.435 kb on + strand at 857.436 kb on - strand at 857.472 kb on - strand at 857.472 kb on - strand at 857.478 kb on - strand at 857.563 kb on + strand at 857.622 kb on - strand at 857.627 kb on - strand at 857.651 kb on + strand at 857.652 kb on - strand at 857.718 kb on - strand, within SMa1550 at 857.726 kb on + strand, within SMa1550 at 857.940 kb on + strand, within SMa1550 at 857.941 kb on - strand, within SMa1550 at 858.009 kb on + strand, within SMa1550 at 858.098 kb on + strand, within SMa1550 at 858.099 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.309 kb on + strand at 858.309 kb on + strand at 858.310 kb on - strand at 858.322 kb on + strand at 858.334 kb on + strand at 858.352 kb on - strand at 858.375 kb on - strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.396 kb on - strand at 858.715 kb on + strand, within SMa1552 at 858.715 kb on + strand, within SMa1552 at 858.716 kb on - strand, within SMa1552 at 858.810 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 859.116 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.293 kb on - strand, within SMa1552
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 856,637 + SMa1548 0.75 -0.6 856,637 + SMa1548 0.75 -0.5 856,637 + SMa1548 0.75 +0.2 856,637 + SMa1548 0.75 -0.2 856,638 - SMa1548 0.75 -2.1 856,638 - SMa1548 0.75 +1.1 857,084 - SMa1548 0.89 +0.2 857,097 + SMa1548 0.89 +0.6 857,153 + +1.6 857,373 - -1.6 857,435 + +2.3 857,435 + -1.1 857,436 - -1.0 857,472 - +0.8 857,472 - -0.9 857,478 - +1.7 857,563 + -0.5 857,622 - -0.3 857,627 - -1.3 857,651 + +0.5 857,652 - -0.5 857,718 - SMa1550 0.13 -1.9 857,726 + SMa1550 0.14 +1.2 857,940 + SMa1550 0.46 -0.4 857,941 - SMa1550 0.46 +0.4 858,009 + SMa1550 0.56 +1.8 858,098 + SMa1550 0.69 -1.8 858,099 - SMa1550 0.69 +0.6 858,149 - SMa1550 0.76 -0.6 858,149 - SMa1550 0.76 -0.5 858,149 - SMa1550 0.76 -2.7 858,149 - SMa1550 0.76 +0.2 858,226 + SMa1550 0.87 +0.2 858,226 + SMa1550 0.87 -1.3 858,227 - SMa1550 0.88 +0.3 858,227 - SMa1550 0.88 +0.1 858,227 - SMa1550 0.88 +0.4 858,309 + +0.8 858,309 + +0.7 858,310 - -0.1 858,322 + +0.7 858,334 + +1.1 858,352 - +1.7 858,375 - -0.6 858,395 + +0.3 858,395 + -0.1 858,395 + -0.8 858,395 + -1.5 858,396 - -0.3 858,715 + SMa1552 0.18 -0.5 858,715 + SMa1552 0.18 -0.1 858,716 - SMa1552 0.18 -0.8 858,810 + SMa1552 0.25 +0.9 858,826 + SMa1552 0.27 +0.1 858,826 + SMa1552 0.27 -0.1 858,827 - SMa1552 0.27 -0.1 858,827 - SMa1552 0.27 +1.2 859,116 + SMa1552 0.48 +0.8 859,221 + SMa1552 0.56 +0.6 859,221 + SMa1552 0.56 +0.4 859,292 + SMa1552 0.61 +0.5 859,292 + SMa1552 0.61 -0.5 859,293 - SMa1552 0.61 -0.1
Or see this region's nucleotide sequence