Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1367 and SMa1368 are separated by 7 nucleotides SMa1368 and SMa1370 overlap by 1 nucleotides SMa1370 and SMa1371 overlap by 4 nucleotides SMa1371 and SMa1374 are separated by 2 nucleotides
SMa1367: SMa1367 - short chain alcohol dehydrogenase-related dehydrogenase, at 751,181 to 751,939
SMa1367
SMa1368: SMa1368 - hypothetical protein, at 751,947 to 752,672
SMa1368
SMa1370: SMa1370 - ABC transporter ATP-binding protein, at 752,672 to 753,655
SMa1370
SMa1371: SMa1371 - ABC transporter ATP-binding protein, at 753,652 to 754,632
SMa1371
SMa1374: SMa1374 - ABC transporter permease, at 754,635 to 755,594
SMa1374
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.814 kb on + strand, within SMa1367 at 752.222 kb on + strand, within SMa1368 at 752.222 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.489 kb on + strand, within SMa1368 at 752.896 kb on + strand, within SMa1370 at 752.897 kb on - strand, within SMa1370 at 752.898 kb on + strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.919 kb on + strand, within SMa1370 at 752.920 kb on - strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 753.024 kb on + strand, within SMa1370 at 753.025 kb on - strand, within SMa1370 at 753.025 kb on - strand, within SMa1370 at 753.030 kb on - strand, within SMa1370 at 753.059 kb on - strand, within SMa1370 at 753.343 kb on + strand, within SMa1370 at 753.345 kb on + strand, within SMa1370 at 753.346 kb on - strand, within SMa1370 at 753.413 kb on - strand, within SMa1370 at 753.609 kb on + strand at 753.610 kb on - strand at 753.656 kb on - strand at 753.820 kb on + strand, within SMa1371 at 753.884 kb on + strand, within SMa1371 at 753.885 kb on - strand, within SMa1371 at 753.947 kb on + strand, within SMa1371 at 753.947 kb on + strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 753.948 kb on - strand, within SMa1371 at 754.072 kb on + strand, within SMa1371 at 754.073 kb on - strand, within SMa1371
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 751,814 + SMa1367 0.83 +0.1 752,222 + SMa1368 0.38 +1.8 752,222 + SMa1368 0.38 -0.2 752,388 + SMa1368 0.61 -1.4 752,388 + SMa1368 0.61 +0.4 752,489 + SMa1368 0.75 +0.1 752,896 + SMa1370 0.23 +0.4 752,897 - SMa1370 0.23 +0.4 752,898 + SMa1370 0.23 +0.9 752,899 - SMa1370 0.23 +1.6 752,899 - SMa1370 0.23 -0.7 752,908 + SMa1370 0.24 +0.9 752,908 + SMa1370 0.24 +0.2 752,919 + SMa1370 0.25 -0.1 752,920 - SMa1370 0.25 -0.3 752,961 + SMa1370 0.29 -0.4 752,961 + SMa1370 0.29 +1.1 752,961 + SMa1370 0.29 -0.1 752,961 + SMa1370 0.29 +1.7 752,961 + SMa1370 0.29 +0.2 753,024 + SMa1370 0.36 -1.8 753,025 - SMa1370 0.36 -1.1 753,025 - SMa1370 0.36 +1.8 753,030 - SMa1370 0.36 -0.8 753,059 - SMa1370 0.39 -1.0 753,343 + SMa1370 0.68 +0.8 753,345 + SMa1370 0.68 +1.6 753,346 - SMa1370 0.68 -0.1 753,413 - SMa1370 0.75 +0.5 753,609 + +1.2 753,610 - +1.4 753,656 - -0.5 753,820 + SMa1371 0.17 -1.3 753,884 + SMa1371 0.24 -0.4 753,885 - SMa1371 0.24 +0.9 753,947 + SMa1371 0.30 -0.6 753,947 + SMa1371 0.30 +1.1 753,948 - SMa1371 0.30 +0.4 753,948 - SMa1371 0.30 +0.5 753,948 - SMa1371 0.30 -0.5 753,948 - SMa1371 0.30 +0.0 753,948 - SMa1371 0.30 +0.4 753,948 - SMa1371 0.30 -0.6 754,072 + SMa1371 0.43 +0.6 754,073 - SMa1371 0.43 +0.1
Or see this region's nucleotide sequence