Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1289 and SMa1291 overlap by 10 nucleotides SMa1291 and SMa1292 are separated by 6 nucleotides SMa1292 and SMa1294 overlap by 4 nucleotides SMa1294 and SMa1296 are separated by 495 nucleotides
SMa1289: SMa1289 - hypothetical protein, at 703,500 to 704,006
SMa1289
SMa1291: SMa1291 - Protease, at 703,997 to 704,974
SMa1291
SMa1292: SMa1292 - Peptidase, at 704,981 to 705,916
SMa1292
SMa1294: SMa1294 - hypothetical protein, at 705,913 to 706,359
SMa1294
SMa1296: SMa1296 - alcohol dehydrogenase, at 706,855 to 707,877
SMa1296
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.069 kb on + strand at 704.147 kb on - strand, within SMa1291 at 704.154 kb on - strand, within SMa1291 at 704.229 kb on - strand, within SMa1291 at 704.293 kb on + strand, within SMa1291 at 704.294 kb on - strand, within SMa1291 at 704.316 kb on - strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.537 kb on + strand, within SMa1291 at 704.549 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.640 kb on - strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.834 kb on + strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.835 kb on - strand, within SMa1291 at 704.897 kb on - strand at 704.972 kb on + strand at 705.143 kb on + strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.144 kb on - strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.240 kb on + strand, within SMa1292 at 705.241 kb on - strand, within SMa1292 at 705.396 kb on + strand, within SMa1292 at 705.397 kb on - strand, within SMa1292 at 705.818 kb on + strand, within SMa1292 at 706.357 kb on + strand at 706.357 kb on + strand at 706.373 kb on + strand at 706.373 kb on + strand at 706.373 kb on + strand at 706.374 kb on - strand at 706.692 kb on + strand at 706.692 kb on + strand at 706.693 kb on - strand at 706.696 kb on + strand at 706.696 kb on + strand at 706.696 kb on + strand at 706.697 kb on - strand at 706.716 kb on + strand at 706.716 kb on + strand at 706.717 kb on - strand at 706.759 kb on + strand at 706.759 kb on + strand at 706.759 kb on + strand at 706.789 kb on + strand at 706.807 kb on + strand at 706.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 704,069 + +0.5 704,147 - SMa1291 0.15 +1.3 704,154 - SMa1291 0.16 -0.8 704,229 - SMa1291 0.24 +0.5 704,293 + SMa1291 0.30 -2.7 704,294 - SMa1291 0.30 -1.3 704,316 - SMa1291 0.33 -0.0 704,537 + SMa1291 0.55 -0.1 704,537 + SMa1291 0.55 -1.3 704,549 - SMa1291 0.56 +0.9 704,640 - SMa1291 0.66 +0.1 704,640 - SMa1291 0.66 -0.1 704,834 + SMa1291 0.86 +1.5 704,834 + SMa1291 0.86 +0.9 704,835 - SMa1291 0.86 -0.0 704,835 - SMa1291 0.86 -0.9 704,897 - -0.8 704,972 + +0.5 705,143 + SMa1292 0.17 +0.7 705,144 - SMa1292 0.17 -0.3 705,144 - SMa1292 0.17 +0.2 705,240 + SMa1292 0.28 -0.7 705,240 + SMa1292 0.28 +2.2 705,240 + SMa1292 0.28 +0.1 705,241 - SMa1292 0.28 +1.0 705,396 + SMa1292 0.44 -0.2 705,397 - SMa1292 0.44 +0.4 705,818 + SMa1292 0.89 -0.8 706,357 + +0.4 706,357 + +1.1 706,373 + -1.0 706,373 + -1.1 706,373 + -0.9 706,374 - -1.2 706,692 + -0.2 706,692 + -1.9 706,693 - -0.6 706,696 + +0.8 706,696 + +0.1 706,696 + +0.3 706,697 - +0.4 706,716 + -1.3 706,716 + -1.0 706,717 - +2.4 706,759 + +0.1 706,759 + +0.3 706,759 + +0.1 706,789 + +0.8 706,807 + -1.1 706,879 - +0.8
Or see this region's nucleotide sequence