Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0861 and SMa0863 are separated by 301 nucleotides SMa0863 and SMa0864 are separated by 3 nucleotides
SMa0861: SMa0861 - transposase, fragment, at 475,959 to 476,840
SMa0861
SMa0863: SMa0863 - NodJ ABC transporter permease, at 477,142 to 477,930
SMa0863
SMa0864: SMa0864 - nodulation factor exporter subunit NodI, at 477,934 to 479,001
SMa0864
Position (kb) 477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.179 kb on + strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.485 kb on + strand, within SMa0861 at 476.496 kb on + strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.642 kb on - strand, within SMa0861 at 476.811 kb on + strand at 476.812 kb on - strand at 476.826 kb on - strand at 476.882 kb on + strand at 476.883 kb on - strand at 477.008 kb on - strand at 477.200 kb on + strand at 477.200 kb on + strand at 477.201 kb on - strand at 477.201 kb on - strand at 477.401 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.486 kb on - strand, within SMa0863 at 477.564 kb on + strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.669 kb on - strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.738 kb on - strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.800 kb on - strand, within SMa0863 at 477.803 kb on - strand, within SMa0863 at 477.964 kb on + strand at 478.037 kb on - strand at 478.037 kb on - strand at 478.109 kb on - strand, within SMa0864 at 478.109 kb on - strand, within SMa0864 at 478.120 kb on + strand, within SMa0864 at 478.142 kb on + strand, within SMa0864 at 478.151 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.582 kb on + strand, within SMa0864 at 478.583 kb on - strand, within SMa0864 at 478.604 kb on - strand, within SMa0864 at 478.701 kb on + strand, within SMa0864 at 478.805 kb on + strand, within SMa0864
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 476,179 + SMa0861 0.25 -0.4 476,379 - SMa0861 0.48 +0.1 476,379 - SMa0861 0.48 -0.9 476,485 + SMa0861 0.60 +1.2 476,496 + SMa0861 0.61 -0.3 476,497 - SMa0861 0.61 +1.1 476,497 - SMa0861 0.61 -0.4 476,642 - SMa0861 0.77 +1.5 476,811 + -0.3 476,812 - -0.8 476,826 - -0.8 476,882 + +0.2 476,883 - -0.2 477,008 - +2.3 477,200 + +0.5 477,200 + -0.8 477,201 - +0.1 477,201 - -0.6 477,401 + SMa0863 0.33 +0.5 477,439 + SMa0863 0.38 +0.2 477,439 + SMa0863 0.38 -0.4 477,439 + SMa0863 0.38 -1.8 477,455 - SMa0863 0.40 +0.2 477,455 - SMa0863 0.40 +0.3 477,486 - SMa0863 0.44 +0.1 477,564 + SMa0863 0.53 -0.1 477,565 - SMa0863 0.54 -0.3 477,565 - SMa0863 0.54 -0.5 477,669 - SMa0863 0.67 -0.9 477,737 + SMa0863 0.75 -3.4 477,737 + SMa0863 0.75 -0.0 477,737 + SMa0863 0.75 -1.9 477,738 - SMa0863 0.76 +0.5 477,799 + SMa0863 0.83 -1.5 477,799 + SMa0863 0.83 -0.8 477,799 + SMa0863 0.83 +0.3 477,799 + SMa0863 0.83 -1.5 477,800 - SMa0863 0.83 +0.4 477,803 - SMa0863 0.84 -0.7 477,964 + +0.0 478,037 - +0.2 478,037 - -0.0 478,109 - SMa0864 0.16 +2.7 478,109 - SMa0864 0.16 -1.0 478,120 + SMa0864 0.17 +1.4 478,142 + SMa0864 0.19 +0.3 478,151 - SMa0864 0.20 -0.8 478,264 - SMa0864 0.31 -1.2 478,264 - SMa0864 0.31 -0.1 478,264 - SMa0864 0.31 +0.1 478,582 + SMa0864 0.61 +0.4 478,583 - SMa0864 0.61 +0.9 478,604 - SMa0864 0.63 +0.1 478,701 + SMa0864 0.72 +1.7 478,805 + SMa0864 0.82 +0.8
Or see this region's nucleotide sequence