Strain Fitness in Sinorhizobium meliloti 1021 around SMa0359

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0357 and SMa0359 are separated by 8 nucleotidesSMa0359 and SMa0360 overlap by 4 nucleotides SMa0357: SMa0357 - hypothetical protein, at 193,272 to 193,553 SMa0357 SMa0359: SMa0359 - hypothetical protein, at 193,562 to 193,807 SMa0359 SMa0360: SMa0360 - transposase, at 193,804 to 194,493 SMa0360 Position (kb) 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 192.627 kb on + strandat 192.627 kb on + strandat 192.630 kb on + strandat 192.630 kb on + strandat 192.644 kb on + strandat 192.645 kb on - strandat 192.676 kb on + strandat 192.677 kb on - strandat 192.808 kb on + strandat 192.840 kb on - strandat 192.840 kb on - strandat 192.841 kb on + strandat 192.841 kb on + strandat 192.910 kb on + strandat 192.911 kb on - strandat 192.911 kb on - strandat 192.914 kb on + strandat 192.915 kb on - strandat 192.957 kb on - strandat 193.012 kb on + strandat 193.060 kb on + strandat 193.103 kb on - strandat 193.124 kb on - strandat 193.295 kb on + strandat 193.296 kb on - strandat 193.317 kb on + strand, within SMa0357at 193.317 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.371 kb on + strand, within SMa0357at 193.402 kb on + strand, within SMa0357at 193.433 kb on + strand, within SMa0357at 193.563 kb on + strandat 193.633 kb on + strand, within SMa0359at 193.634 kb on - strand, within SMa0359at 193.636 kb on - strand, within SMa0359at 193.674 kb on + strand, within SMa0359at 193.694 kb on + strand, within SMa0359at 193.716 kb on + strand, within SMa0359at 193.730 kb on + strand, within SMa0359at 193.731 kb on - strand, within SMa0359at 193.731 kb on - strand, within SMa0359at 193.790 kb on + strandat 193.813 kb on + strandat 193.814 kb on - strandat 193.814 kb on - strandat 193.963 kb on - strand, within SMa0360at 194.196 kb on - strand, within SMa0360at 194.322 kb on + strand, within SMa0360at 194.512 kb on + strandat 194.513 kb on - strandat 194.537 kb on + strandat 194.537 kb on + strandat 194.538 kb on - strandat 194.558 kb on + strandat 194.558 kb on + strandat 194.558 kb on + strandat 194.659 kb on - strandat 194.700 kb on + strandat 194.700 kb on + strandat 194.701 kb on - strandat 194.701 kb on - strandat 194.703 kb on + strandat 194.703 kb on + strandat 194.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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192,627 + +0.1
192,627 + +0.8
192,630 + +2.3
192,630 + -0.4
192,644 + -0.1
192,645 - -1.2
192,676 + -0.5
192,677 - +0.0
192,808 + +0.6
192,840 - -0.6
192,840 - -1.1
192,841 + +1.4
192,841 + +0.6
192,910 + +0.5
192,911 - -0.2
192,911 - +0.2
192,914 + +1.4
192,915 - -0.8
192,957 - +0.7
193,012 + -0.5
193,060 + +0.7
193,103 - -1.0
193,124 - -0.4
193,295 + +0.1
193,296 - -0.0
193,317 + SMa0357 0.16 +0.5
193,317 + SMa0357 0.16 +0.0
193,371 + SMa0357 0.35 +0.4
193,371 + SMa0357 0.35 +0.9
193,402 + SMa0357 0.46 -1.2
193,433 + SMa0357 0.57 +0.4
193,563 + -0.2
193,633 + SMa0359 0.29 +0.8
193,634 - SMa0359 0.29 -0.3
193,636 - SMa0359 0.30 +0.5
193,674 + SMa0359 0.46 +1.4
193,694 + SMa0359 0.54 -0.9
193,716 + SMa0359 0.63 -0.4
193,730 + SMa0359 0.68 -2.1
193,731 - SMa0359 0.69 +0.2
193,731 - SMa0359 0.69 -0.9
193,790 + -0.2
193,813 + +1.1
193,814 - +0.3
193,814 - -0.1
193,963 - SMa0360 0.23 -0.5
194,196 - SMa0360 0.57 +1.2
194,322 + SMa0360 0.75 +1.4
194,512 + -1.0
194,513 - -2.0
194,537 + -2.0
194,537 + +0.7
194,538 - -0.6
194,558 + -0.4
194,558 + +2.7
194,558 + -0.1
194,659 - -0.4
194,700 + -1.4
194,700 + +0.1
194,701 - -1.4
194,701 - +1.3
194,703 + -0.7
194,703 + -0.9
194,778 - +1.0

Or see this region's nucleotide sequence