Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0224 and SMa0226 are separated by 199 nucleotides SMa0226 and SMa0228 are separated by 166 nucleotides
SMa0224: SMa0224 - Permease, MFS, at 123,589 to 125,061
SMa0224
SMa0226: SMa0226 - dehydrogenase, at 125,261 to 126,253
SMa0226
SMa0228: SMa0228 - glutamate dehydrogenase, at 126,420 to 127,766
SMa0228
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 124.277 kb on - strand, within SMa0224 at 124.319 kb on + strand, within SMa0224 at 124.320 kb on - strand, within SMa0224 at 124.398 kb on + strand, within SMa0224 at 124.398 kb on + strand, within SMa0224 at 124.407 kb on + strand, within SMa0224 at 124.408 kb on - strand, within SMa0224 at 124.408 kb on - strand, within SMa0224 at 124.577 kb on + strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.830 kb on + strand, within SMa0224 at 124.831 kb on - strand, within SMa0224 at 124.831 kb on - strand, within SMa0224 at 125.060 kb on - strand at 125.060 kb on - strand at 125.064 kb on - strand at 125.064 kb on - strand at 125.206 kb on - strand at 125.299 kb on - strand at 125.435 kb on + strand, within SMa0226 at 125.435 kb on + strand, within SMa0226 at 125.640 kb on - strand, within SMa0226 at 125.641 kb on + strand, within SMa0226 at 125.669 kb on + strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.912 kb on + strand, within SMa0226 at 125.913 kb on - strand, within SMa0226 at 125.913 kb on - strand, within SMa0226 at 126.283 kb on + strand at 126.284 kb on - strand at 126.284 kb on - strand at 126.374 kb on - strand at 126.471 kb on - strand at 126.471 kb on - strand at 126.535 kb on + strand at 126.691 kb on - strand, within SMa0228 at 126.901 kb on - strand, within SMa0228 at 126.951 kb on + strand, within SMa0228 at 126.966 kb on + strand, within SMa0228 at 126.966 kb on + strand, within SMa0228 at 126.966 kb on + strand, within SMa0228 at 126.966 kb on + strand, within SMa0228 at 126.967 kb on - strand, within SMa0228 at 126.968 kb on + strand, within SMa0228 at 126.969 kb on - strand, within SMa0228 at 126.969 kb on - strand, within SMa0228 at 126.969 kb on - strand, within SMa0228 at 126.978 kb on - strand, within SMa0228 at 126.987 kb on + strand, within SMa0228 at 126.987 kb on + strand, within SMa0228 at 127.071 kb on + strand, within SMa0228 at 127.071 kb on + strand, within SMa0228 at 127.072 kb on - strand, within SMa0228 at 127.150 kb on + strand, within SMa0228 at 127.151 kb on - strand, within SMa0228 at 127.151 kb on - strand, within SMa0228 at 127.151 kb on - strand, within SMa0228 at 127.158 kb on + strand, within SMa0228 at 127.158 kb on + strand, within SMa0228 at 127.159 kb on - strand, within SMa0228 at 127.160 kb on + strand, within SMa0228 at 127.161 kb on - strand, within SMa0228
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 124,277 - SMa0224 0.47 -1.2 124,319 + SMa0224 0.50 -0.2 124,320 - SMa0224 0.50 +0.0 124,398 + SMa0224 0.55 +0.2 124,398 + SMa0224 0.55 -0.4 124,407 + SMa0224 0.56 -0.2 124,408 - SMa0224 0.56 +0.2 124,408 - SMa0224 0.56 +0.1 124,577 + SMa0224 0.67 +0.4 124,578 - SMa0224 0.67 +0.2 124,578 - SMa0224 0.67 -0.7 124,578 - SMa0224 0.67 -0.8 124,830 + SMa0224 0.84 -0.4 124,831 - SMa0224 0.84 +0.3 124,831 - SMa0224 0.84 +0.1 125,060 - -0.4 125,060 - +1.2 125,064 - -2.0 125,064 - +1.3 125,206 - -1.3 125,299 - -0.1 125,435 + SMa0226 0.18 -0.3 125,435 + SMa0226 0.18 +0.5 125,640 - SMa0226 0.38 +0.8 125,641 + SMa0226 0.38 +1.6 125,669 + SMa0226 0.41 +4.9 125,670 - SMa0226 0.41 -0.3 125,670 - SMa0226 0.41 +2.9 125,670 - SMa0226 0.41 -2.1 125,912 + SMa0226 0.66 +1.1 125,913 - SMa0226 0.66 -0.1 125,913 - SMa0226 0.66 +0.3 126,283 + -0.7 126,284 - -0.4 126,284 - +1.1 126,374 - -0.9 126,471 - -0.0 126,471 - -1.2 126,535 + -0.1 126,691 - SMa0228 0.20 +1.1 126,901 - SMa0228 0.36 +0.9 126,951 + SMa0228 0.39 -0.1 126,966 + SMa0228 0.41 -0.2 126,966 + SMa0228 0.41 -0.4 126,966 + SMa0228 0.41 +0.0 126,966 + SMa0228 0.41 +0.7 126,967 - SMa0228 0.41 -2.6 126,968 + SMa0228 0.41 +0.5 126,969 - SMa0228 0.41 -0.2 126,969 - SMa0228 0.41 +2.0 126,969 - SMa0228 0.41 +0.2 126,978 - SMa0228 0.41 -0.1 126,987 + SMa0228 0.42 +0.9 126,987 + SMa0228 0.42 +0.4 127,071 + SMa0228 0.48 -0.6 127,071 + SMa0228 0.48 +1.5 127,072 - SMa0228 0.48 -0.6 127,150 + SMa0228 0.54 +1.7 127,151 - SMa0228 0.54 +1.4 127,151 - SMa0228 0.54 +0.2 127,151 - SMa0228 0.54 -0.4 127,158 + SMa0228 0.55 +0.8 127,158 + SMa0228 0.55 +0.2 127,159 - SMa0228 0.55 -1.2 127,160 + SMa0228 0.55 -0.4 127,161 - SMa0228 0.55 +0.5
Or see this region's nucleotide sequence