Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0078 and SMa0079 are separated by 124 nucleotides SMa0079 and SMa0081 are separated by 10 nucleotides SMa0081 and SMa0082 are separated by 29 nucleotides
SMa0078: SMa0078 - LacI family transcriptional regulator, at 40,959 to 41,981
SMa0078
SMa0079: SMa0079 - ABC transporter permease, at 42,106 to 42,774
SMa0079
SMa0081: SMa0081 - ABC transporter permease, at 42,785 to 43,441
SMa0081
SMa0082: SMa0082 - ABC transporter substrate-binding protein, at 43,471 to 44,286
SMa0082
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.118 kb on + strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.274 kb on - strand, within SMa0078 at 41.389 kb on + strand, within SMa0078 at 41.390 kb on - strand, within SMa0078 at 41.419 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.449 kb on - strand, within SMa0078 at 41.463 kb on + strand, within SMa0078 at 41.464 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078 at 41.939 kb on + strand at 42.109 kb on + strand at 42.109 kb on + strand at 42.110 kb on - strand at 42.270 kb on - strand, within SMa0079 at 42.280 kb on + strand, within SMa0079 at 42.280 kb on + strand, within SMa0079 at 42.412 kb on + strand, within SMa0079 at 42.412 kb on + strand, within SMa0079 at 42.413 kb on - strand, within SMa0079 at 42.413 kb on - strand, within SMa0079 at 42.453 kb on + strand, within SMa0079 at 42.454 kb on - strand, within SMa0079 at 42.464 kb on + strand, within SMa0079 at 42.569 kb on + strand, within SMa0079 at 42.569 kb on + strand, within SMa0079 at 42.570 kb on - strand, within SMa0079 at 42.570 kb on - strand, within SMa0079 at 42.571 kb on + strand, within SMa0079 at 42.571 kb on + strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.674 kb on - strand, within SMa0079 at 42.674 kb on - strand at 42.674 kb on - strand, within SMa0079 at 42.675 kb on + strand, within SMa0079 at 42.676 kb on - strand, within SMa0079 at 42.999 kb on + strand, within SMa0081 at 43.163 kb on + strand, within SMa0081 at 43.248 kb on + strand, within SMa0081 at 43.248 kb on + strand, within SMa0081 at 43.249 kb on - strand, within SMa0081 at 43.282 kb on + strand, within SMa0081 at 43.364 kb on + strand, within SMa0081 at 43.365 kb on - strand, within SMa0081 at 43.470 kb on + strand at 43.487 kb on + strand at 43.488 kb on - strand at 43.494 kb on + strand at 43.494 kb on + strand at 43.495 kb on - strand at 43.500 kb on + strand at 43.501 kb on - strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.509 kb on - strand at 43.509 kb on - strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.515 kb on - strand at 43.515 kb on - strand at 43.596 kb on + strand, within SMa0082 at 43.756 kb on + strand, within SMa0082 at 43.756 kb on + strand, within SMa0082
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 41,118 + SMa0078 0.16 -0.1 41,119 - SMa0078 0.16 -2.3 41,119 - SMa0078 0.16 -0.5 41,119 - SMa0078 0.16 -2.4 41,119 - SMa0078 0.16 +0.6 41,124 + SMa0078 0.16 -0.3 41,124 + SMa0078 0.16 -1.0 41,124 + SMa0078 0.16 -2.5 41,124 + SMa0078 0.16 -0.6 41,125 - SMa0078 0.16 -0.0 41,125 - SMa0078 0.16 -0.2 41,274 - SMa0078 0.31 -0.5 41,389 + SMa0078 0.42 -2.7 41,390 - SMa0078 0.42 -0.2 41,419 + SMa0078 0.45 -0.3 41,448 + SMa0078 0.48 -0.1 41,448 + SMa0078 0.48 -2.2 41,448 + SMa0078 0.48 -1.2 41,448 + SMa0078 0.48 -1.0 41,448 + SMa0078 0.48 -0.6 41,449 - SMa0078 0.48 -1.3 41,463 + SMa0078 0.49 -1.1 41,464 - SMa0078 0.49 -0.2 41,685 - SMa0078 0.71 -1.1 41,685 - SMa0078 0.71 -1.7 41,939 + -0.1 42,109 + -2.5 42,109 + +0.5 42,110 - +0.2 42,270 - SMa0079 0.25 -0.0 42,280 + SMa0079 0.26 +0.9 42,280 + SMa0079 0.26 +0.3 42,412 + SMa0079 0.46 +0.1 42,412 + SMa0079 0.46 -1.9 42,413 - SMa0079 0.46 +1.1 42,413 - SMa0079 0.46 -2.6 42,453 + SMa0079 0.52 +0.9 42,454 - SMa0079 0.52 +0.4 42,464 + SMa0079 0.54 +1.1 42,569 + SMa0079 0.69 +0.0 42,569 + SMa0079 0.69 +1.1 42,570 - SMa0079 0.69 -0.3 42,570 - SMa0079 0.69 -0.6 42,571 + SMa0079 0.70 -2.1 42,571 + SMa0079 0.70 +1.2 42,572 - SMa0079 0.70 +1.5 42,572 - SMa0079 0.70 +0.8 42,572 - SMa0079 0.70 -0.3 42,572 - SMa0079 0.70 +0.1 42,572 - SMa0079 0.70 +0.2 42,572 - SMa0079 0.70 -0.6 42,673 + SMa0079 0.85 +2.4 42,673 + SMa0079 0.85 -1.5 42,673 + SMa0079 0.85 +0.5 42,673 + SMa0079 0.85 -0.6 42,673 + SMa0079 0.85 -0.5 42,673 + SMa0079 0.85 -0.5 42,674 - SMa0079 0.85 +0.8 42,674 - +1.3 42,674 - SMa0079 0.85 -0.1 42,675 + SMa0079 0.85 -0.6 42,676 - SMa0079 0.85 +1.0 42,999 + SMa0081 0.33 -1.0 43,163 + SMa0081 0.58 -0.5 43,248 + SMa0081 0.70 -0.0 43,248 + SMa0081 0.70 -3.0 43,249 - SMa0081 0.71 +0.7 43,282 + SMa0081 0.76 +0.0 43,364 + SMa0081 0.88 +0.1 43,365 - SMa0081 0.88 -0.4 43,470 + -0.4 43,487 + +0.1 43,488 - +0.5 43,494 + +0.7 43,494 + -0.9 43,495 - -0.0 43,500 + +1.9 43,501 - +0.9 43,508 + -0.0 43,508 + +0.1 43,508 + +0.8 43,508 + +0.0 43,509 - +0.4 43,509 - -3.4 43,514 + -0.4 43,514 + +0.6 43,514 + +0.2 43,514 + -1.8 43,515 - +0.5 43,515 - -0.9 43,596 + SMa0082 0.15 -2.6 43,756 + SMa0082 0.35 -0.3 43,756 + SMa0082 0.35 -1.7
Or see this region's nucleotide sequence