Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21469

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21468 and SM_b21469 are separated by 96 nucleotidesSM_b21469 and SM_b21470 are separated by 109 nucleotidesSM_b21470 and SM_b21471 overlap by 23 nucleotidesSM_b21471 and SM_b21472 are separated by 43 nucleotides SM_b21468: SM_b21468 - hypothetical protein, at 1,395,922 to 1,397,019 _b21468 SM_b21469: SM_b21469 - hypothetical protein, at 1,397,116 to 1,397,625 _b21469 SM_b21470: SM_b21470 - hypothetical protein, at 1,397,735 to 1,398,016 _b21470 SM_b21471: SM_b21471 - hypothetical protein, at 1,397,994 to 1,398,242 _b21471 SM_b21472: SM_b21472 - hypothetical protein, at 1,398,286 to 1,398,825 _b21472 Position (kb) 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1396.128 kb on - strand, within SM_b21468at 1396.134 kb on - strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.184 kb on + strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.185 kb on - strand, within SM_b21468at 1396.292 kb on + strand, within SM_b21468at 1396.397 kb on + strand, within SM_b21468at 1396.459 kb on + strand, within SM_b21468at 1396.460 kb on - strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.568 kb on + strand, within SM_b21468at 1396.569 kb on - strand, within SM_b21468at 1396.596 kb on + strand, within SM_b21468at 1396.596 kb on + strand, within SM_b21468at 1396.848 kb on - strand, within SM_b21468at 1397.096 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.136 kb on - strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.142 kb on - strandat 1397.189 kb on + strand, within SM_b21469at 1397.260 kb on + strand, within SM_b21469at 1397.265 kb on - strand, within SM_b21469at 1397.265 kb on - strand, within SM_b21469at 1397.394 kb on + strand, within SM_b21469at 1397.395 kb on - strand, within SM_b21469at 1397.395 kb on - strand, within SM_b21469at 1397.432 kb on - strand, within SM_b21469at 1397.553 kb on - strand, within SM_b21469at 1397.581 kb on - strandat 1397.583 kb on - strandat 1397.604 kb on + strandat 1397.604 kb on + strandat 1397.605 kb on - strandat 1397.623 kb on + strandat 1397.624 kb on - strandat 1397.624 kb on - strandat 1397.738 kb on + strandat 1397.739 kb on - strandat 1397.767 kb on + strand, within SM_b21470at 1397.861 kb on + strand, within SM_b21470at 1397.864 kb on + strand, within SM_b21470at 1397.864 kb on + strand, within SM_b21470at 1397.865 kb on - strand, within SM_b21470at 1397.877 kb on + strand, within SM_b21470at 1398.180 kb on + strand, within SM_b21471at 1398.180 kb on + strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.231 kb on - strandat 1398.231 kb on - strandat 1398.308 kb on + strandat 1398.309 kb on - strandat 1398.438 kb on + strand, within SM_b21472at 1398.452 kb on - strand, within SM_b21472at 1398.488 kb on + strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,396,128 - SM_b21468 0.19 -0.1
1,396,134 - SM_b21468 0.19 -0.1
1,396,184 + SM_b21468 0.24 +0.9
1,396,184 + SM_b21468 0.24 -0.1
1,396,184 + SM_b21468 0.24 -0.0
1,396,184 + SM_b21468 0.24 -0.1
1,396,185 - SM_b21468 0.24 +0.2
1,396,185 - SM_b21468 0.24 -0.1
1,396,185 - SM_b21468 0.24 -0.2
1,396,185 - SM_b21468 0.24 +0.9
1,396,292 + SM_b21468 0.34 +0.6
1,396,397 + SM_b21468 0.43 -0.3
1,396,459 + SM_b21468 0.49 -0.6
1,396,460 - SM_b21468 0.49 +0.2
1,396,568 + SM_b21468 0.59 +1.1
1,396,568 + SM_b21468 0.59 -0.2
1,396,568 + SM_b21468 0.59 +0.7
1,396,569 - SM_b21468 0.59 -1.4
1,396,596 + SM_b21468 0.61 +1.7
1,396,596 + SM_b21468 0.61 -0.8
1,396,848 - SM_b21468 0.84 -2.1
1,397,096 + -0.3
1,397,135 + -0.0
1,397,135 + -0.3
1,397,135 + -0.9
1,397,135 + +0.6
1,397,135 + -1.0
1,397,135 + -0.2
1,397,136 - -1.0
1,397,139 + -0.6
1,397,139 + -1.5
1,397,139 + -0.7
1,397,139 + -0.2
1,397,140 - -1.3
1,397,140 - +1.7
1,397,140 - +0.6
1,397,140 - +0.7
1,397,140 - +0.1
1,397,140 - -0.4
1,397,140 - +1.3
1,397,140 - -0.3
1,397,142 - -1.8
1,397,189 + SM_b21469 0.14 +1.3
1,397,260 + SM_b21469 0.28 -0.1
1,397,265 - SM_b21469 0.29 +1.2
1,397,265 - SM_b21469 0.29 -0.8
1,397,394 + SM_b21469 0.55 +1.1
1,397,395 - SM_b21469 0.55 -0.3
1,397,395 - SM_b21469 0.55 +1.3
1,397,432 - SM_b21469 0.62 +0.8
1,397,553 - SM_b21469 0.86 +0.2
1,397,581 - -0.4
1,397,583 - -0.0
1,397,604 + -1.0
1,397,604 + +0.9
1,397,605 - +0.2
1,397,623 + -0.5
1,397,624 - -0.2
1,397,624 - -0.2
1,397,738 + -0.1
1,397,739 - -0.4
1,397,767 + SM_b21470 0.11 -0.6
1,397,861 + SM_b21470 0.45 +0.3
1,397,864 + SM_b21470 0.46 -0.9
1,397,864 + SM_b21470 0.46 +0.9
1,397,865 - SM_b21470 0.46 -1.1
1,397,877 + SM_b21470 0.50 +0.3
1,398,180 + SM_b21471 0.75 +0.8
1,398,180 + SM_b21471 0.75 -0.0
1,398,181 - SM_b21471 0.75 +0.8
1,398,181 - SM_b21471 0.75 -1.0
1,398,231 - +0.1
1,398,231 - -0.5
1,398,308 + +1.2
1,398,309 - -1.4
1,398,438 + SM_b21472 0.28 +0.2
1,398,452 - SM_b21472 0.31 -0.3
1,398,488 + SM_b21472 0.37 -0.0
1,398,489 - SM_b21472 0.38 -0.6
1,398,489 - SM_b21472 0.38 -1.6
1,398,495 - +3.3

Or see this region's nucleotide sequence