Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20916

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20915 and SM_b20916 are separated by 105 nucleotides SM_b20915: SM_b20915 - arylsulfatase, at 1,322,896 to 1,324,509 _b20915 SM_b20916: SM_b20916 - hypothetical protein, at 1,324,615 to 1,324,875 _b20916 Position (kb) 1324 1325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1323.668 kb on - strand, within SM_b20915at 1323.696 kb on + strand, within SM_b20915at 1323.697 kb on - strand, within SM_b20915at 1323.697 kb on - strand, within SM_b20915at 1323.697 kb on - strand, within SM_b20915at 1323.742 kb on + strand, within SM_b20915at 1323.788 kb on + strand, within SM_b20915at 1323.823 kb on - strand, within SM_b20915at 1323.837 kb on + strand, within SM_b20915at 1323.985 kb on - strand, within SM_b20915at 1324.003 kb on + strand, within SM_b20915at 1324.004 kb on - strand, within SM_b20915at 1324.004 kb on - strand, within SM_b20915at 1324.095 kb on + strand, within SM_b20915at 1324.096 kb on - strand, within SM_b20915at 1324.096 kb on - strand, within SM_b20915at 1324.114 kb on + strand, within SM_b20915at 1324.116 kb on + strand, within SM_b20915at 1324.117 kb on - strand, within SM_b20915at 1324.117 kb on - strand, within SM_b20915at 1324.174 kb on + strand, within SM_b20915at 1324.263 kb on - strand, within SM_b20915at 1324.594 kb on - strandat 1324.594 kb on - strandat 1324.616 kb on + strandat 1324.616 kb on + strandat 1324.617 kb on - strandat 1324.617 kb on - strandat 1324.685 kb on + strand, within SM_b20916at 1324.686 kb on - strand, within SM_b20916at 1324.686 kb on - strand, within SM_b20916at 1324.702 kb on + strand, within SM_b20916at 1324.800 kb on - strand, within SM_b20916at 1324.800 kb on - strand, within SM_b20916at 1324.837 kb on + strand, within SM_b20916at 1324.848 kb on + strand, within SM_b20916at 1324.849 kb on - strand, within SM_b20916at 1324.908 kb on + strandat 1324.909 kb on - strandat 1324.935 kb on + strandat 1324.946 kb on + strandat 1324.963 kb on + strandat 1324.964 kb on - strandat 1324.983 kb on - strandat 1324.987 kb on - strandat 1324.987 kb on - strandat 1324.997 kb on + strandat 1324.997 kb on + strandat 1324.998 kb on - strandat 1324.998 kb on - strandat 1325.054 kb on + strandat 1325.055 kb on - strandat 1325.121 kb on - strandat 1325.153 kb on - strandat 1325.182 kb on + strandat 1325.183 kb on - strandat 1325.243 kb on - strandat 1325.252 kb on - strandat 1325.282 kb on - strandat 1325.285 kb on + strandat 1325.293 kb on + strandat 1325.323 kb on + strandat 1325.323 kb on + strandat 1325.337 kb on - strandat 1325.649 kb on + strandat 1325.672 kb on + strandat 1325.718 kb on + strandat 1325.719 kb on - strandat 1325.731 kb on - strandat 1325.860 kb on - strandat 1325.860 kb on - strandat 1325.864 kb on - strandat 1325.864 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,323,668 - SM_b20915 0.48 -0.3
1,323,696 + SM_b20915 0.50 -0.5
1,323,697 - SM_b20915 0.50 +0.3
1,323,697 - SM_b20915 0.50 -1.7
1,323,697 - SM_b20915 0.50 -2.9
1,323,742 + SM_b20915 0.52 +1.9
1,323,788 + SM_b20915 0.55 -1.0
1,323,823 - SM_b20915 0.57 -0.0
1,323,837 + SM_b20915 0.58 -0.5
1,323,985 - SM_b20915 0.67 +1.1
1,324,003 + SM_b20915 0.69 -1.3
1,324,004 - SM_b20915 0.69 +0.0
1,324,004 - SM_b20915 0.69 +0.3
1,324,095 + SM_b20915 0.74 +0.8
1,324,096 - SM_b20915 0.74 -1.6
1,324,096 - SM_b20915 0.74 -1.0
1,324,114 + SM_b20915 0.75 +0.6
1,324,116 + SM_b20915 0.76 +0.5
1,324,117 - SM_b20915 0.76 +1.4
1,324,117 - SM_b20915 0.76 -0.2
1,324,174 + SM_b20915 0.79 +4.0
1,324,263 - SM_b20915 0.85 +0.2
1,324,594 - +1.1
1,324,594 - -0.1
1,324,616 + +1.7
1,324,616 + -1.4
1,324,617 - -0.1
1,324,617 - +0.7
1,324,685 + SM_b20916 0.27 +2.0
1,324,686 - SM_b20916 0.27 -0.1
1,324,686 - SM_b20916 0.27 +1.5
1,324,702 + SM_b20916 0.33 +0.3
1,324,800 - SM_b20916 0.71 +0.1
1,324,800 - SM_b20916 0.71 +0.6
1,324,837 + SM_b20916 0.85 +1.0
1,324,848 + SM_b20916 0.89 +0.5
1,324,849 - SM_b20916 0.90 +2.4
1,324,908 + +2.4
1,324,909 - +0.6
1,324,935 + +0.9
1,324,946 + -0.5
1,324,963 + +2.4
1,324,964 - +1.1
1,324,983 - +2.9
1,324,987 - +1.1
1,324,987 - -0.7
1,324,997 + +0.3
1,324,997 + -0.3
1,324,998 - +1.2
1,324,998 - +0.8
1,325,054 + -0.6
1,325,055 - +1.3
1,325,121 - -0.5
1,325,153 - -2.7
1,325,182 + -0.2
1,325,183 - +0.3
1,325,243 - -1.0
1,325,252 - +0.4
1,325,282 - +0.9
1,325,285 + +0.7
1,325,293 + -0.3
1,325,323 + +0.2
1,325,323 + +0.8
1,325,337 - +0.8
1,325,649 + +1.7
1,325,672 + -0.9
1,325,718 + +0.1
1,325,719 - -1.1
1,325,731 - -0.8
1,325,860 - +0.3
1,325,860 - -1.7
1,325,864 - -1.9
1,325,864 - +0.4

Or see this region's nucleotide sequence