Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20832 and SM_b20833 overlap by 4 nucleotides SM_b20833 and SM_b20834 overlap by 4 nucleotides SM_b20834 and SM_b20835 are separated by 88 nucleotides
SM_b20832: SM_b20832 - cell surface polysaccharide export ABC-2 transporter ATP-binding protein, at 624,306 to 624,965
_b20832
SM_b20833: SM_b20833 - cell surface polysaccharide export ABC-2 transporter permease, close relative of Y20822wzm2, at 624,962 to 625,741
_b20833
SM_b20834: SM_b20834 - surface saccharide synthesis protein, at 625,738 to 627,036
_b20834
SM_b20835: SM_b20835 - hypothetical protein, at 627,125 to 628,120
_b20835
Position (kb) 625
626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 625.038 kb on + strand at 625.044 kb on + strand, within SM_b20833 at 625.045 kb on - strand, within SM_b20833 at 625.081 kb on - strand, within SM_b20833 at 625.185 kb on - strand, within SM_b20833 at 625.227 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.236 kb on + strand, within SM_b20833 at 625.237 kb on - strand at 625.327 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.527 kb on + strand, within SM_b20833 at 625.528 kb on - strand, within SM_b20833 at 625.644 kb on + strand, within SM_b20833 at 625.725 kb on + strand at 625.751 kb on + strand at 625.757 kb on - strand at 625.757 kb on - strand at 625.757 kb on - strand at 625.775 kb on + strand at 625.776 kb on - strand at 625.776 kb on - strand at 625.849 kb on + strand at 625.850 kb on - strand at 625.910 kb on + strand, within SM_b20834 at 625.911 kb on - strand, within SM_b20834 at 626.043 kb on - strand, within SM_b20834 at 626.043 kb on - strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.051 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.138 kb on + strand, within SM_b20834 at 626.139 kb on - strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.211 kb on + strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.212 kb on - strand, within SM_b20834 at 626.213 kb on + strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.214 kb on - strand, within SM_b20834 at 626.489 kb on + strand, within SM_b20834 at 626.490 kb on - strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.525 kb on + strand, within SM_b20834 at 626.526 kb on - strand, within SM_b20834 at 626.547 kb on + strand, within SM_b20834 at 626.606 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.654 kb on + strand, within SM_b20834 at 626.737 kb on + strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.738 kb on - strand, within SM_b20834 at 626.915 kb on + strand at 626.998 kb on - strand at 627.068 kb on + strand at 627.069 kb on - strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.072 kb on + strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.073 kb on - strand at 627.109 kb on + strand at 627.110 kb on - strand at 627.226 kb on + strand, within SM_b20835 at 627.226 kb on + strand, within SM_b20835 at 627.262 kb on - strand, within SM_b20835 at 627.277 kb on - strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.436 kb on - strand, within SM_b20835 at 627.448 kb on + strand, within SM_b20835 at 627.449 kb on - strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.502 kb on - strand, within SM_b20835 at 627.569 kb on - strand, within SM_b20835 at 627.627 kb on + strand, within SM_b20835 at 627.628 kb on - strand, within SM_b20835 at 627.666 kb on + strand, within SM_b20835 at 627.667 kb on - strand, within SM_b20835 at 627.679 kb on - strand, within SM_b20835 at 627.753 kb on - strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.829 kb on - strand, within SM_b20835 at 627.885 kb on + strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 625,038 + -0.5 625,044 + SM_b20833 0.11 +0.7 625,045 - SM_b20833 0.11 +2.4 625,081 - SM_b20833 0.15 -0.6 625,185 - SM_b20833 0.29 -1.4 625,227 + SM_b20833 0.34 -1.3 625,236 + SM_b20833 0.35 -0.8 625,236 + SM_b20833 0.35 -0.5 625,236 + SM_b20833 0.35 -0.1 625,237 - -0.3 625,327 + SM_b20833 0.47 +0.5 625,527 + SM_b20833 0.72 -0.2 625,527 + SM_b20833 0.72 -0.7 625,527 + SM_b20833 0.72 +0.2 625,528 - SM_b20833 0.73 -0.5 625,644 + SM_b20833 0.87 -0.8 625,725 + +0.4 625,751 + +1.1 625,757 - +0.5 625,757 - -0.0 625,757 - -0.2 625,775 + +0.6 625,776 - +0.7 625,776 - -0.5 625,849 + +0.5 625,850 - +0.1 625,910 + SM_b20834 0.13 +2.2 625,911 - SM_b20834 0.13 +0.5 626,043 - SM_b20834 0.23 -1.1 626,043 - SM_b20834 0.23 +1.1 626,051 + SM_b20834 0.24 +2.7 626,051 + SM_b20834 0.24 +1.0 626,051 + SM_b20834 0.24 -0.7 626,138 + SM_b20834 0.31 +0.5 626,138 + SM_b20834 0.31 +1.1 626,138 + SM_b20834 0.31 +1.4 626,139 - SM_b20834 0.31 +1.0 626,211 + SM_b20834 0.36 +1.4 626,211 + SM_b20834 0.36 +0.8 626,211 + SM_b20834 0.36 +0.9 626,212 - SM_b20834 0.36 +1.2 626,212 - SM_b20834 0.36 +0.4 626,212 - SM_b20834 0.36 +1.9 626,213 + SM_b20834 0.37 +1.8 626,214 - SM_b20834 0.37 +0.7 626,214 - SM_b20834 0.37 -2.3 626,489 + SM_b20834 0.58 -0.7 626,490 - SM_b20834 0.58 +0.3 626,525 + SM_b20834 0.61 +1.0 626,525 + SM_b20834 0.61 +1.3 626,526 - SM_b20834 0.61 +2.1 626,547 + SM_b20834 0.62 +1.4 626,606 + SM_b20834 0.67 +2.7 626,654 + SM_b20834 0.71 -1.3 626,654 + SM_b20834 0.71 +1.3 626,737 + SM_b20834 0.77 +4.0 626,738 - SM_b20834 0.77 +1.3 626,738 - SM_b20834 0.77 +1.6 626,915 + +2.2 626,998 - +0.2 627,068 + +1.2 627,069 - +0.1 627,072 + +0.9 627,072 + +1.4 627,072 + +1.1 627,072 + +0.4 627,072 + +0.1 627,072 + +1.7 627,072 + +0.3 627,073 - +2.0 627,073 - -0.0 627,073 - -0.9 627,109 + +2.2 627,110 - -0.0 627,226 + SM_b20835 0.10 -0.4 627,226 + SM_b20835 0.10 +1.1 627,262 - SM_b20835 0.14 -0.2 627,277 - SM_b20835 0.15 +1.4 627,405 + SM_b20835 0.28 -2.6 627,405 + SM_b20835 0.28 -0.3 627,405 + SM_b20835 0.28 -1.3 627,405 + SM_b20835 0.28 -0.4 627,405 + SM_b20835 0.28 +1.3 627,406 - SM_b20835 0.28 +1.7 627,406 - SM_b20835 0.28 -0.7 627,406 - SM_b20835 0.28 +0.1 627,436 - SM_b20835 0.31 +0.7 627,448 + SM_b20835 0.32 +0.1 627,449 - SM_b20835 0.33 +0.2 627,501 + SM_b20835 0.38 -0.8 627,501 + SM_b20835 0.38 +0.2 627,501 + SM_b20835 0.38 -0.3 627,501 + SM_b20835 0.38 +0.6 627,502 - SM_b20835 0.38 +2.3 627,569 - SM_b20835 0.45 +1.7 627,627 + SM_b20835 0.50 -0.7 627,628 - SM_b20835 0.51 -0.2 627,666 + SM_b20835 0.54 -0.0 627,667 - SM_b20835 0.54 +0.7 627,679 - SM_b20835 0.56 -0.1 627,753 - SM_b20835 0.63 -0.3 627,777 + SM_b20835 0.65 -1.4 627,777 + SM_b20835 0.65 -0.1 627,778 - SM_b20835 0.66 -0.8 627,778 - SM_b20835 0.66 -1.5 627,829 - SM_b20835 0.71 -0.4 627,885 + SM_b20835 0.76 -0.1 627,886 - SM_b20835 0.76 +0.3 627,886 - SM_b20835 0.76 +0.1 627,886 - SM_b20835 0.76 +0.1
Or see this region's nucleotide sequence