Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20725

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20724 and SM_b20725 overlap by 4 nucleotidesSM_b20725 and SM_b20726 are separated by 119 nucleotides SM_b20724: SM_b20724 - hypothetical protein, at 1,529,225 to 1,530,169 _b20724 SM_b20725: SM_b20725 - hypothetical protein, at 1,530,166 to 1,530,657 _b20725 SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294 _b20726 Position (kb) 1530 1531Strain fitness (log2 ratio) -2 -1 0 1 2at 1529.486 kb on + strand, within SM_b20724at 1529.486 kb on + strand, within SM_b20724at 1529.506 kb on - strand, within SM_b20724at 1529.747 kb on + strand, within SM_b20724at 1529.747 kb on + strand, within SM_b20724at 1529.748 kb on - strand, within SM_b20724at 1529.748 kb on - strand, within SM_b20724at 1529.748 kb on - strand, within SM_b20724at 1530.080 kb on + strandat 1530.328 kb on + strand, within SM_b20725at 1530.546 kb on - strand, within SM_b20725at 1530.706 kb on + strandat 1530.707 kb on - strandat 1530.711 kb on + strandat 1530.712 kb on - strandat 1530.712 kb on - strandat 1530.738 kb on - strandat 1530.749 kb on - strandat 1530.761 kb on + strandat 1530.762 kb on - strandat 1530.782 kb on + strandat 1530.783 kb on - strandat 1530.841 kb on - strandat 1530.933 kb on + strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.978 kb on + strand, within SM_b20726at 1530.978 kb on + strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.993 kb on + strand, within SM_b20726at 1530.993 kb on + strand, within SM_b20726at 1530.994 kb on - strand, within SM_b20726at 1530.994 kb on - strand, within SM_b20726at 1531.176 kb on + strand, within SM_b20726at 1531.176 kb on + strand, within SM_b20726at 1531.614 kb on + strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,529,486 + SM_b20724 0.28 -0.2
1,529,486 + SM_b20724 0.28 +0.7
1,529,506 - SM_b20724 0.30 +2.1
1,529,747 + SM_b20724 0.55 -0.9
1,529,747 + SM_b20724 0.55 -1.2
1,529,748 - SM_b20724 0.55 +0.1
1,529,748 - SM_b20724 0.55 +2.0
1,529,748 - SM_b20724 0.55 -0.4
1,530,080 + +0.1
1,530,328 + SM_b20725 0.33 -0.7
1,530,546 - SM_b20725 0.77 -1.1
1,530,706 + -0.9
1,530,707 - +0.5
1,530,711 + -0.5
1,530,712 - +1.0
1,530,712 - -1.9
1,530,738 - +0.4
1,530,749 - +1.0
1,530,761 + -1.6
1,530,762 - +0.2
1,530,782 + +0.4
1,530,783 - -2.0
1,530,841 - -1.4
1,530,933 + SM_b20726 0.10 -0.5
1,530,934 - SM_b20726 0.10 +1.7
1,530,934 - SM_b20726 0.10 +0.9
1,530,934 - SM_b20726 0.10 -0.4
1,530,978 + SM_b20726 0.13 +1.1
1,530,978 + SM_b20726 0.13 -0.1
1,530,979 - SM_b20726 0.13 -2.2
1,530,979 - SM_b20726 0.13 +1.4
1,530,979 - SM_b20726 0.13 -0.4
1,530,993 + SM_b20726 0.14 +0.5
1,530,993 + SM_b20726 0.14 -0.1
1,530,994 - SM_b20726 0.14 +0.4
1,530,994 - SM_b20726 0.14 -0.1
1,531,176 + SM_b20726 0.26 +0.5
1,531,176 + SM_b20726 0.26 -0.2
1,531,614 + SM_b20726 0.55 -0.7
1,531,615 - SM_b20726 0.55 -1.0
1,531,615 - SM_b20726 0.55 +0.6
1,531,615 - SM_b20726 0.55 -1.7
1,531,615 - SM_b20726 0.55 +0.5
1,531,615 - SM_b20726 0.55 -0.1
1,531,615 - SM_b20726 0.55 +0.9
1,531,615 - SM_b20726 0.55 +0.0

Or see this region's nucleotide sequence