Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20699 and SM_b20700 are separated by 86 nucleotides SM_b20700 and SM_b20701 are separated by 76 nucleotides SM_b20701 and SM_b20702 are separated by 182 nucleotides
SM_b20699: SM_b20699 - protein secretion protein, at 1,500,350 to 1,501,447
_b20699
SM_b20700: SM_b20700 - hypothetical protein, at 1,501,534 to 1,501,947
_b20700
SM_b20701: SM_b20701 - hypothetical protein, at 1,502,024 to 1,502,776
_b20701
SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623
_b20702
Position (kb)
1502
1503 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1501.247 kb on - strand, within SM_b20699 at 1501.263 kb on + strand, within SM_b20699 at 1501.264 kb on - strand, within SM_b20699 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.679 kb on + strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.740 kb on - strand at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.793 kb on + strand, within SM_b20700 at 1501.794 kb on - strand, within SM_b20700 at 1501.853 kb on - strand, within SM_b20700 at 1502.404 kb on - strand, within SM_b20701 at 1502.969 kb on - strand at 1502.975 kb on + strand at 1502.975 kb on + strand at 1502.975 kb on + strand at 1502.976 kb on - strand at 1502.978 kb on + strand at 1502.978 kb on + strand at 1503.049 kb on + strand at 1503.050 kb on - strand at 1503.050 kb on - strand at 1503.050 kb on - strand at 1503.380 kb on + strand, within SM_b20702 at 1503.491 kb on - strand, within SM_b20702 at 1503.576 kb on + strand, within SM_b20702 at 1503.576 kb on + strand, within SM_b20702 at 1503.577 kb on - strand, within SM_b20702 at 1503.580 kb on + strand, within SM_b20702 at 1503.583 kb on - strand, within SM_b20702 at 1503.583 kb on - strand, within SM_b20702 at 1503.634 kb on + strand, within SM_b20702 at 1503.634 kb on + strand, within SM_b20702 at 1503.635 kb on - strand, within SM_b20702 at 1503.635 kb on - strand, within SM_b20702
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,501,247 - SM_b20699 0.82 +2.0 1,501,263 + SM_b20699 0.83 -0.6 1,501,264 - SM_b20699 0.83 +0.1 1,501,631 - SM_b20700 0.23 -0.8 1,501,631 - SM_b20700 0.23 -0.6 1,501,631 - SM_b20700 0.23 +0.3 1,501,631 - SM_b20700 0.23 -0.0 1,501,679 + SM_b20700 0.35 -0.6 1,501,680 - SM_b20700 0.35 -0.2 1,501,680 - SM_b20700 0.35 -0.3 1,501,680 - SM_b20700 0.35 -0.2 1,501,740 - +2.7 1,501,740 - SM_b20700 0.50 -0.0 1,501,740 - SM_b20700 0.50 +0.0 1,501,740 - SM_b20700 0.50 +1.7 1,501,793 + SM_b20700 0.63 -1.3 1,501,794 - SM_b20700 0.63 +2.0 1,501,853 - SM_b20700 0.77 -1.1 1,502,404 - SM_b20701 0.50 -1.3 1,502,969 - +0.9 1,502,975 + -1.1 1,502,975 + +0.8 1,502,975 + +0.7 1,502,976 - +0.7 1,502,978 + -0.6 1,502,978 + -1.1 1,503,049 + -0.5 1,503,050 - -0.0 1,503,050 - -0.6 1,503,050 - -2.7 1,503,380 + SM_b20702 0.25 +0.4 1,503,491 - SM_b20702 0.32 -0.8 1,503,576 + SM_b20702 0.37 -0.0 1,503,576 + SM_b20702 0.37 -0.5 1,503,577 - SM_b20702 0.37 -0.4 1,503,580 + SM_b20702 0.37 +0.6 1,503,583 - SM_b20702 0.37 +0.3 1,503,583 - SM_b20702 0.37 +0.9 1,503,634 + SM_b20702 0.41 -2.1 1,503,634 + SM_b20702 0.41 -0.1 1,503,635 - SM_b20702 0.41 +0.2 1,503,635 - SM_b20702 0.41 +0.0
Or see this region's nucleotide sequence