Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20476 and SM_b20477 are separated by 77 nucleotides SM_b20477 and SM_b20478 overlap by 4 nucleotides
SM_b20476: SM_b20476 - peptide ABC transporter substrate-binding protein, at 488,823 to 490,388
_b20476
SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413
_b20477
SM_b20478: SM_b20478 - dipeptide ABC transporter permease and ATP-binding protein, at 491,410 to 493,212
_b20478
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 489.720 kb on + strand, within SM_b20476 at 489.832 kb on - strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 490.006 kb on - strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.387 kb on - strand at 490.462 kb on - strand at 490.475 kb on + strand at 490.476 kb on - strand at 490.476 kb on - strand at 490.589 kb on + strand, within SM_b20477 at 490.590 kb on - strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 491.058 kb on + strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.154 kb on - strand, within SM_b20477 at 491.317 kb on - strand, within SM_b20477 at 491.348 kb on + strand at 491.348 kb on + strand at 491.348 kb on + strand at 491.349 kb on - strand at 491.654 kb on + strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.821 kb on + strand, within SM_b20478 at 491.882 kb on - strand, within SM_b20478 at 491.902 kb on - strand, within SM_b20478 at 492.003 kb on + strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 489,720 + SM_b20476 0.57 -0.0 489,832 - SM_b20476 0.64 +2.5 489,903 + SM_b20476 0.69 -0.7 489,903 + SM_b20476 0.69 +0.5 489,904 - SM_b20476 0.69 +1.2 489,904 - SM_b20476 0.69 -2.7 489,904 - SM_b20476 0.69 -0.1 489,904 - SM_b20476 0.69 +0.5 490,006 - SM_b20476 0.76 -0.1 490,164 + SM_b20476 0.86 +0.2 490,164 + SM_b20476 0.86 -1.6 490,387 - +0.9 490,462 - +0.7 490,475 + -0.2 490,476 - +0.4 490,476 - +0.9 490,589 + SM_b20477 0.13 +0.2 490,590 - SM_b20477 0.13 -1.1 490,922 + SM_b20477 0.48 -1.2 490,922 + SM_b20477 0.48 -1.3 490,923 - SM_b20477 0.48 -1.4 490,923 - SM_b20477 0.48 +0.7 490,923 - SM_b20477 0.48 -0.9 490,967 + SM_b20477 0.53 +3.2 490,967 + SM_b20477 0.53 -0.6 490,967 + SM_b20477 0.53 -0.2 490,968 - SM_b20477 0.53 -0.1 490,968 - SM_b20477 0.53 -0.9 491,058 + SM_b20477 0.62 +0.0 491,059 - SM_b20477 0.63 -0.8 491,059 - SM_b20477 0.63 -0.8 491,105 + SM_b20477 0.67 -0.2 491,105 + SM_b20477 0.67 -0.9 491,105 + SM_b20477 0.67 -1.1 491,105 + SM_b20477 0.67 -0.0 491,105 + SM_b20477 0.67 +0.4 491,105 + SM_b20477 0.67 +0.0 491,105 + SM_b20477 0.67 -1.6 491,106 - SM_b20477 0.68 -1.3 491,106 - SM_b20477 0.68 -0.3 491,154 - SM_b20477 0.73 +1.2 491,317 - SM_b20477 0.90 -0.9 491,348 + +0.9 491,348 + +1.3 491,348 + +0.6 491,349 - -0.4 491,654 + SM_b20478 0.14 +0.8 491,655 - SM_b20478 0.14 +0.0 491,655 - SM_b20478 0.14 -1.5 491,821 + SM_b20478 0.23 +1.9 491,882 - SM_b20478 0.26 -0.0 491,902 - SM_b20478 0.27 +1.0 492,003 + SM_b20478 0.33 +0.3 492,004 - SM_b20478 0.33 -1.1 492,004 - SM_b20478 0.33 +0.5
Or see this region's nucleotide sequence