Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20450 and SM_b20451 are separated by 4 nucleotides SM_b20451 and SM_b20452 are separated by 14 nucleotides SM_b20452 and SM_b20453 are separated by 35 nucleotides
SM_b20450: SM_b20450 - regulatory protein, at 462,325 to 464,685
_b20450
SM_b20451: SM_b20451 - hypothetical protein, at 464,690 to 465,253
_b20451
SM_b20452: SM_b20452 - hypothetical protein, at 465,268 to 465,606
_b20452
SM_b20453: SM_b20453 - gluconolactonase, at 465,642 to 466,553
_b20453
Position (kb) 465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.490 kb on + strand at 464.700 kb on + strand at 464.700 kb on + strand at 464.700 kb on + strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.701 kb on - strand at 464.702 kb on + strand at 464.702 kb on + strand at 464.702 kb on + strand at 464.703 kb on - strand at 464.703 kb on - strand at 464.703 kb on - strand at 464.886 kb on - strand, within SM_b20451 at 465.042 kb on + strand, within SM_b20451 at 465.043 kb on - strand, within SM_b20451 at 465.043 kb on - strand, within SM_b20451 at 465.046 kb on - strand, within SM_b20451 at 465.049 kb on - strand, within SM_b20451 at 465.082 kb on - strand, within SM_b20451 at 465.152 kb on + strand, within SM_b20451 at 465.153 kb on - strand, within SM_b20451 at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.218 kb on + strand at 465.219 kb on - strand at 465.219 kb on - strand at 465.219 kb on - strand at 465.227 kb on - strand at 465.319 kb on + strand, within SM_b20452 at 465.319 kb on + strand, within SM_b20452 at 465.319 kb on + strand, within SM_b20452 at 465.320 kb on - strand, within SM_b20452 at 465.388 kb on - strand, within SM_b20452 at 465.388 kb on - strand, within SM_b20452 at 465.513 kb on + strand, within SM_b20452 at 465.599 kb on + strand at 465.644 kb on - strand at 465.673 kb on + strand at 465.674 kb on - strand at 465.674 kb on - strand at 465.682 kb on + strand at 465.683 kb on - strand at 465.738 kb on + strand, within SM_b20453 at 465.739 kb on - strand, within SM_b20453 at 465.906 kb on + strand, within SM_b20453 at 465.939 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.981 kb on - strand, within SM_b20453 at 465.983 kb on - strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.123 kb on + strand, within SM_b20453 at 466.124 kb on - strand, within SM_b20453 at 466.141 kb on + strand, within SM_b20453 at 466.141 kb on + strand, within SM_b20453 at 466.142 kb on - strand, within SM_b20453 at 466.142 kb on - strand, within SM_b20453 at 466.219 kb on + strand, within SM_b20453 at 466.219 kb on + strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.220 kb on - strand, within SM_b20453 at 466.334 kb on - strand, within SM_b20453 at 466.403 kb on + strand, within SM_b20453 at 466.471 kb on + strand at 466.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 464,490 + +0.9 464,700 + -0.7 464,700 + +0.9 464,700 + +0.4 464,701 - +1.6 464,701 - -1.0 464,701 - +1.8 464,701 - +1.1 464,701 - +0.1 464,701 - -1.4 464,701 - +1.1 464,702 + -2.1 464,702 + +0.6 464,702 + -0.1 464,703 - +0.8 464,703 - -0.6 464,703 - -0.1 464,886 - SM_b20451 0.35 -0.0 465,042 + SM_b20451 0.62 +0.8 465,043 - SM_b20451 0.63 +1.8 465,043 - SM_b20451 0.63 +0.0 465,046 - SM_b20451 0.63 -0.3 465,049 - SM_b20451 0.64 -1.6 465,082 - SM_b20451 0.70 +1.7 465,152 + SM_b20451 0.82 -0.7 465,153 - SM_b20451 0.82 -0.7 465,218 + +0.7 465,218 + -0.1 465,218 + +0.6 465,218 + -0.3 465,218 + +0.1 465,219 - -0.7 465,219 - -1.0 465,219 - -0.6 465,227 - +0.5 465,319 + SM_b20452 0.15 -1.9 465,319 + SM_b20452 0.15 -0.7 465,319 + SM_b20452 0.15 -2.3 465,320 - SM_b20452 0.15 +0.7 465,388 - SM_b20452 0.35 -0.3 465,388 - SM_b20452 0.35 -0.3 465,513 + SM_b20452 0.72 -0.7 465,599 + +0.7 465,644 - +0.8 465,673 + +0.1 465,674 - -0.2 465,674 - +0.2 465,682 + -0.6 465,683 - -0.3 465,738 + SM_b20453 0.11 +1.1 465,739 - SM_b20453 0.11 +0.0 465,906 + SM_b20453 0.29 -1.7 465,939 - SM_b20453 0.33 -0.2 465,981 - SM_b20453 0.37 -0.0 465,981 - SM_b20453 0.37 -1.6 465,981 - SM_b20453 0.37 -0.6 465,983 - SM_b20453 0.37 +0.4 466,123 + SM_b20453 0.53 -1.9 466,123 + SM_b20453 0.53 +0.4 466,123 + SM_b20453 0.53 -0.3 466,124 - SM_b20453 0.53 -1.3 466,141 + SM_b20453 0.55 -0.7 466,141 + SM_b20453 0.55 +0.7 466,142 - SM_b20453 0.55 -1.8 466,142 - SM_b20453 0.55 +1.2 466,219 + SM_b20453 0.63 +2.2 466,219 + SM_b20453 0.63 -0.2 466,220 - SM_b20453 0.63 -3.3 466,220 - SM_b20453 0.63 +0.5 466,220 - SM_b20453 0.63 +0.7 466,334 - SM_b20453 0.76 -0.8 466,403 + SM_b20453 0.83 -0.9 466,471 + +1.9 466,535 - +0.6
Or see this region's nucleotide sequence