Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20116 and SM_b20117 are separated by 129 nucleotides SM_b20117 and SM_b20118 are separated by 480 nucleotides SM_b20118 and SM_b20119 are separated by 22 nucleotides
SM_b20116: SM_b20116 - hypothetical protein, at 128,252 to 130,456
_b20116
SM_b20117: SM_b20117 - sugar transferase, at 130,586 to 131,686
_b20117
SM_b20118: SM_b20118 - hypothetical protein, at 132,167 to 132,586
_b20118
SM_b20119: SM_b20119 - hypothetical protein, at 132,609 to 132,965
_b20119
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 130.333 kb on + strand at 130.334 kb on - strand at 130.334 kb on - strand at 130.368 kb on + strand at 130.369 kb on - strand at 130.538 kb on + strand at 130.678 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 131.308 kb on - strand, within SM_b20117 at 131.469 kb on + strand, within SM_b20117 at 131.470 kb on - strand, within SM_b20117 at 131.679 kb on - strand at 131.765 kb on + strand at 131.766 kb on - strand at 131.766 kb on - strand at 131.766 kb on - strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.097 kb on - strand at 132.131 kb on + strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.139 kb on + strand at 132.139 kb on + strand at 132.140 kb on - strand at 132.179 kb on + strand at 132.180 kb on - strand at 132.180 kb on - strand at 132.295 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.374 kb on - strand, within SM_b20118 at 132.392 kb on + strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.443 kb on - strand, within SM_b20118 at 132.498 kb on + strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.508 kb on + strand, within SM_b20118 at 132.509 kb on - strand, within SM_b20118 at 132.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 129,591 + SM_b20116 0.61 +1.7 129,591 + SM_b20116 0.61 -1.1 129,591 + SM_b20116 0.61 -0.9 129,591 + SM_b20116 0.61 +0.4 129,592 - SM_b20116 0.61 +0.9 129,592 - SM_b20116 0.61 +0.4 129,592 - SM_b20116 0.61 +0.7 130,333 + +1.7 130,334 - +0.3 130,334 - -2.1 130,368 + -0.2 130,369 - +0.3 130,538 + +2.7 130,678 - -0.0 130,690 - -0.9 130,690 - -2.5 130,690 - -0.9 131,308 - SM_b20117 0.66 +1.6 131,469 + SM_b20117 0.80 +0.3 131,470 - SM_b20117 0.80 +0.6 131,679 - -0.4 131,765 + -0.7 131,766 - +2.3 131,766 - -0.8 131,766 - +0.4 132,010 + -0.1 132,010 + -0.5 132,010 + +1.1 132,011 - -0.3 132,011 - +0.3 132,011 - -2.3 132,011 - -0.4 132,011 - +1.1 132,097 - +0.1 132,131 + +1.6 132,132 - -1.3 132,132 - +0.5 132,132 - +0.0 132,132 - +0.2 132,139 + +0.1 132,139 + -0.2 132,140 - +0.4 132,179 + -2.5 132,180 - +0.3 132,180 - +0.7 132,295 - SM_b20118 0.30 -0.2 132,313 - SM_b20118 0.35 +0.8 132,313 - SM_b20118 0.35 -0.3 132,332 - SM_b20118 0.39 -2.7 132,332 - SM_b20118 0.39 -0.7 132,332 - SM_b20118 0.39 +2.3 132,374 - SM_b20118 0.49 +0.8 132,392 + SM_b20118 0.54 -0.0 132,393 - SM_b20118 0.54 +1.9 132,393 - SM_b20118 0.54 -0.9 132,393 - SM_b20118 0.54 -1.2 132,443 - SM_b20118 0.66 -0.4 132,498 + SM_b20118 0.79 +0.7 132,499 - SM_b20118 0.79 +1.6 132,499 - SM_b20118 0.79 +1.1 132,499 - SM_b20118 0.79 -0.7 132,499 - SM_b20118 0.79 -1.3 132,508 + SM_b20118 0.81 +0.6 132,509 - SM_b20118 0.81 -0.6 132,611 - -0.0
Or see this region's nucleotide sequence