Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20113

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20111 and SM_b20112 overlap by 4 nucleotidesSM_b20112 and SM_b20113 are separated by 36 nucleotidesSM_b20113 and SM_b20114 are separated by 2 nucleotidesSM_b20114 and SM_b20115 are separated by 26 nucleotides SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788 _b20111 SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672 _b20112 SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641 _b20113 SM_b20114: SM_b20114 - hypothetical protein, at 125,644 to 126,369 _b20114 SM_b20115: SM_b20115 - dihydroxy-acid dehydratase, at 126,396 to 128,117 _b20115 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 123.723 kb on + strandat 123.725 kb on + strandat 123.725 kb on + strandat 123.726 kb on - strandat 123.726 kb on - strandat 123.726 kb on - strandat 123.947 kb on + strand, within SM_b20112at 123.947 kb on + strand, within SM_b20112at 123.948 kb on - strand, within SM_b20112at 124.086 kb on + strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.671 kb on - strandat 124.960 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.412 kb on + strand, within SM_b20113at 125.465 kb on - strand, within SM_b20113at 125.558 kb on - strandat 125.646 kb on - strandat 125.709 kb on - strandat 126.197 kb on + strand, within SM_b20114at 126.198 kb on - strand, within SM_b20114at 126.198 kb on - strand, within SM_b20114at 126.208 kb on - strand, within SM_b20114at 126.319 kb on + strandat 126.319 kb on + strandat 126.359 kb on + strandat 126.359 kb on + strandat 126.359 kb on + strandat 126.359 kb on + strandat 126.360 kb on - strandat 126.360 kb on - strandat 126.360 kb on - strandat 126.503 kb on - strandat 126.515 kb on - strandat 126.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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123,723 + +2.7
123,725 + -0.7
123,725 + +0.7
123,726 - +1.7
123,726 - -3.0
123,726 - +1.7
123,947 + SM_b20112 0.18 +0.6
123,947 + SM_b20112 0.18 +1.4
123,948 - SM_b20112 0.18 +0.3
124,086 + SM_b20112 0.34 +0.9
124,477 - SM_b20112 0.78 -0.7
124,477 - SM_b20112 0.78 -0.1
124,477 - SM_b20112 0.78 +2.0
124,671 - +0.7
124,960 - SM_b20113 0.27 +0.3
125,171 - SM_b20113 0.50 +0.5
125,171 - SM_b20113 0.50 -2.4
125,171 - SM_b20113 0.50 -0.5
125,412 + SM_b20113 0.75 -0.2
125,465 - SM_b20113 0.81 +0.2
125,558 - -0.7
125,646 - +0.3
125,709 - +1.2
126,197 + SM_b20114 0.76 +0.8
126,198 - SM_b20114 0.76 +0.4
126,198 - SM_b20114 0.76 +0.2
126,208 - SM_b20114 0.78 +0.7
126,319 + -0.2
126,319 + +0.3
126,359 + +0.7
126,359 + +1.4
126,359 + +0.0
126,359 + +0.2
126,360 - -0.5
126,360 - +1.7
126,360 - +2.3
126,503 - -0.9
126,515 - +0.0
126,558 + -0.2

Or see this region's nucleotide sequence