Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27970

Experiment: Betaine (C)(N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with TAPS
6,225,119	+		PFLU_RS27965	0.17	+0.8
6,225,120	-		PFLU_RS27965	0.18	-1.2
6,225,158	+		PFLU_RS27965	0.22	-1.1
6,225,158	+		PFLU_RS27965	0.22	-0.3
6,225,158	+		PFLU_RS27965	0.22	-1.7
6,225,158	+		PFLU_RS27965	0.22	-1.6
6,225,158	+		PFLU_RS27965	0.22	-1.6
6,225,158	+		PFLU_RS27965	0.22	-1.5
6,225,158	+		PFLU_RS27965	0.22	-0.0
6,225,158	+		PFLU_RS27965	0.22	-0.8
6,225,158	+		PFLU_RS27965	0.22	-1.5
6,225,158	+		PFLU_RS27965	0.22	+1.3
6,225,158	+		PFLU_RS27965	0.22	-1.2
6,225,159	-		PFLU_RS27965	0.22	-3.3
6,225,159	-		PFLU_RS27965	0.22	-0.7
6,225,159	-		PFLU_RS27965	0.22	-1.2
6,225,159	-		PFLU_RS27965	0.22	-1.2
6,225,159	-		PFLU_RS27965	0.22	-1.8
6,225,159	-		PFLU_RS27965	0.22	-2.2
6,225,159	-		PFLU_RS27965	0.22	-1.3
6,225,159	-		PFLU_RS27965	0.22	-1.0
6,225,231	+		PFLU_RS27965	0.29	+1.0
6,225,231	+		PFLU_RS27965	0.29	-0.6
6,225,231	+		PFLU_RS27965	0.29	-1.8
6,225,231	+		PFLU_RS27965	0.29	-2.4
6,225,231	+		PFLU_RS27965	0.29	-0.3
6,225,231	+		PFLU_RS27965	0.29	-0.5
6,225,231	+		PFLU_RS27965	0.29	-1.6
6,225,231	+		PFLU_RS27965	0.29	-3.5
6,225,231	+		PFLU_RS27965	0.29	-2.2
6,225,231	+		PFLU_RS27965	0.29	-2.0
6,225,231	+		PFLU_RS27965	0.29	+0.2
6,225,232	-		PFLU_RS27965	0.29	-1.7
6,225,232	-		PFLU_RS27965	0.29	-2.8
6,225,232	-		PFLU_RS27965	0.29	-1.4
6,225,232	-		PFLU_RS27965	0.29	-1.1
6,225,232	-		PFLU_RS27965	0.29	-2.2
6,225,239	+		PFLU_RS27965	0.30	-2.2
6,225,240	-		PFLU_RS27965	0.30	-1.2
6,225,293	+		PFLU_RS27965	0.36	-3.1
6,225,293	+		PFLU_RS27965	0.36	-0.0
6,225,293	+		PFLU_RS27965	0.36	-2.3
6,225,293	+		PFLU_RS27965	0.36	-1.1
6,225,294	-		PFLU_RS27965	0.36	-3.0
6,225,294	-		PFLU_RS27965	0.36	-0.3
6,225,294	-		PFLU_RS27965	0.36	-1.2
6,225,294	-		PFLU_RS27965	0.36	+0.4
6,225,294	-		PFLU_RS27965	0.36	-2.0
6,225,294	-		PFLU_RS27965	0.36	-2.0
6,225,320	+		PFLU_RS27965	0.39	-2.9
6,225,320	+		PFLU_RS27965	0.39	-2.1
6,225,320	+		PFLU_RS27965	0.39	-3.0
6,225,321	-		PFLU_RS27965	0.39	-0.3
6,225,387	-		PFLU_RS27965	0.46	-2.6
6,225,596	+		PFLU_RS27965	0.68	-0.6
6,225,596	+		PFLU_RS27965	0.68	-0.2
6,225,596	+		PFLU_RS27965	0.68	-0.2
6,225,632	+		PFLU_RS27965	0.72	-0.0
6,225,633	-		PFLU_RS27965	0.72	-0.1
6,225,633	-		PFLU_RS27965	0.72	-1.0
6,225,633	-		PFLU_RS27965	0.72	-0.3
6,225,650	+		PFLU_RS27965	0.73	-1.3
6,225,650	+		PFLU_RS27965	0.73	-2.1
6,225,650	+		PFLU_RS27965	0.73	+0.5
6,225,650	+		PFLU_RS27965	0.73	-0.8
6,225,650	+		PFLU_RS27965	0.73	+0.6
6,225,650	+		PFLU_RS27965	0.73	-0.6
6,225,651	-		PFLU_RS27965	0.74	-3.0
6,225,651	-		PFLU_RS27965	0.74	-1.6
6,225,651	-		PFLU_RS27965	0.74	-1.9
6,225,651	-		PFLU_RS27965	0.74	-1.0
6,225,651	-		PFLU_RS27965	0.74	-0.8
6,225,651	-		PFLU_RS27965	0.74	-2.0
6,225,651	-		PFLU_RS27965	0.74	+0.3
6,225,651	-		PFLU_RS27965	0.74	-2.5
6,225,651	-		PFLU_RS27965	0.74	-2.3
6,225,651	-		PFLU_RS27965	0.74	-0.5
6,225,651	-		PFLU_RS27965	0.74	-2.9
6,225,651	-		PFLU_RS27965	0.74	-1.1
6,225,671	+		PFLU_RS27965	0.76	-0.9
6,225,848	-				-2.1
6,225,879	+				-0.6
6,225,879	+				-0.0
6,225,888	-				-0.2
6,225,899	+				-0.0
6,225,899	+				+1.0
6,225,899	+				-0.0
6,225,899	+				-0.2
6,225,899	+				-0.3
6,225,900	-				-2.2
6,225,966	+				-1.7
6,225,966	+				-1.0
6,225,967	-				-1.1
6,225,967	-				-0.9
6,225,967	-				-0.8
6,225,996	-				-1.3
6,225,996	-				-2.9
6,226,003	+				-0.9
6,226,003	+				-1.4
6,226,004	-				-1.1
6,226,004	-				+0.8
6,226,004	-				-1.8
6,226,048	+				-3.0
6,226,048	+				-2.2
6,226,048	+				-3.2
6,226,048	+				-0.3
6,226,049	-				-1.2
6,226,049	-				-3.2
6,226,049	-				-2.3
6,226,161	+		PFLU_RS27970	0.23	-0.8
6,226,161	+		PFLU_RS27970	0.23	-2.5
6,226,162	-		PFLU_RS27970	0.23	-2.3
6,226,162	-		PFLU_RS27970	0.23	-2.8
6,226,162	-		PFLU_RS27970	0.23	-2.6
6,226,170	+		PFLU_RS27970	0.24	-1.2
6,226,170	+		PFLU_RS27970	0.24	-3.0
6,226,170	+		PFLU_RS27970	0.24	-1.6
6,226,170	+		PFLU_RS27970	0.24	-2.6
6,226,170	+		PFLU_RS27970	0.24	-2.5
6,226,170	+		PFLU_RS27970	0.24	-1.1
6,226,171	-		PFLU_RS27970	0.24	+0.1
6,226,171	-		PFLU_RS27970	0.24	-1.5
6,226,336	+		PFLU_RS27970	0.43	-1.5
6,226,336	+		PFLU_RS27970	0.43	+0.8
6,226,336	+		PFLU_RS27970	0.43	-1.2
6,226,336	+		PFLU_RS27970	0.43	-2.2
6,226,336	+		PFLU_RS27970	0.43	-1.8
6,226,337	-		PFLU_RS27970	0.43	-2.4
6,226,337	-		PFLU_RS27970	0.43	-2.6
6,226,337	-		PFLU_RS27970	0.43	-2.5
6,226,376	+		PFLU_RS27970	0.48	-1.6
6,226,377	-		PFLU_RS27970	0.48	-3.3
6,226,377	-		PFLU_RS27970	0.48	-2.2
6,226,390	+		PFLU_RS27970	0.50	-0.3
6,226,391	-		PFLU_RS27970	0.50	-1.9
6,226,486	+		PFLU_RS27970	0.61	-0.7
6,226,486	+		PFLU_RS27970	0.61	-1.2
6,226,486	+		PFLU_RS27970	0.61	-0.4
6,226,486	+		PFLU_RS27970	0.61	-0.6
6,226,486	+		PFLU_RS27970	0.61	-1.1
6,226,486	+		PFLU_RS27970	0.61	-1.3
6,226,487	-		PFLU_RS27970	0.61	-0.2
6,226,487	-		PFLU_RS27970	0.61	-3.0
6,226,487	-		PFLU_RS27970	0.61	-0.1
6,226,505	+		PFLU_RS27970	0.63	+0.3
6,226,506	-		PFLU_RS27970	0.63	-2.2
6,226,506	-		PFLU_RS27970	0.63	-1.3
6,226,612	-		PFLU_RS27970	0.76	-0.1
6,226,647	-		PFLU_RS27970	0.80	-2.6
6,226,795	-				-2.2
6,226,795	-				-1.5
6,226,795	-				-1.5
6,226,799	+				+1.6
6,226,800	-				-1.3
6,226,820	+				-0.8
6,226,909	+				-1.7
6,227,189	-		PFLU_RS27975	0.32	-1.9
6,227,598	+		PFLU_RS27975	0.67	-1.3
6,227,598	+		PFLU_RS27975	0.67	-1.9
6,227,598	+		PFLU_RS27975	0.67	-1.4
6,227,598	+		PFLU_RS27975	0.67	-1.7
6,227,598	+		PFLU_RS27975	0.67	-0.5
6,227,599	-		PFLU_RS27975	0.67	-0.3
6,227,638	+		PFLU_RS27975	0.70	-1.2
6,227,638	+		PFLU_RS27975	0.70	-1.0
6,227,638	+		PFLU_RS27975	0.70	-1.3
6,227,639	-		PFLU_RS27975	0.70	+0.4
6,227,639	-		PFLU_RS27975	0.70	-1.9
6,227,639	-		PFLU_RS27975	0.70	-1.2
6,227,639	-		PFLU_RS27975	0.70	-2.2