Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22670 and HSERO_RS22675 are separated by 62 nucleotides HSERO_RS22675 and HSERO_RS22680 are separated by 201 nucleotides
HSERO_RS22670: HSERO_RS22670 - histidine kinase, at 5,197,340 to 5,198,797
_RS22670
HSERO_RS22675: HSERO_RS22675 - chemotaxis protein, at 5,198,860 to 5,200,653
_RS22675
HSERO_RS22680: HSERO_RS22680 - histidine ammonia-lyase, at 5,200,855 to 5,202,483
_RS22680
Position (kb) 5198
5199
5200
5201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5197.948 kb on + strand, within HSERO_RS22670 at 5198.242 kb on - strand, within HSERO_RS22670 at 5198.243 kb on + strand, within HSERO_RS22670 at 5198.449 kb on + strand, within HSERO_RS22670 at 5198.522 kb on + strand, within HSERO_RS22670 at 5198.532 kb on + strand, within HSERO_RS22670 at 5198.595 kb on - strand, within HSERO_RS22670 at 5198.618 kb on + strand, within HSERO_RS22670 at 5198.684 kb on - strand at 5198.742 kb on + strand at 5198.742 kb on + strand at 5198.742 kb on + strand at 5199.000 kb on - strand at 5199.093 kb on + strand, within HSERO_RS22675 at 5199.116 kb on + strand, within HSERO_RS22675 at 5199.213 kb on - strand, within HSERO_RS22675 at 5199.459 kb on + strand, within HSERO_RS22675 at 5199.487 kb on + strand, within HSERO_RS22675 at 5199.599 kb on + strand, within HSERO_RS22675 at 5199.624 kb on - strand, within HSERO_RS22675 at 5199.722 kb on - strand, within HSERO_RS22675 at 5199.774 kb on + strand, within HSERO_RS22675 at 5199.847 kb on + strand, within HSERO_RS22675 at 5200.072 kb on + strand, within HSERO_RS22675 at 5200.079 kb on - strand, within HSERO_RS22675 at 5200.276 kb on + strand, within HSERO_RS22675 at 5200.284 kb on - strand, within HSERO_RS22675 at 5200.534 kb on + strand at 5200.562 kb on - strand at 5200.584 kb on - strand at 5200.620 kb on + strand at 5200.620 kb on + strand at 5200.628 kb on - strand at 5200.690 kb on + strand at 5200.693 kb on + strand at 5200.695 kb on + strand at 5200.737 kb on - strand at 5201.009 kb on + strand at 5201.087 kb on + strand, within HSERO_RS22680 at 5201.155 kb on - strand, within HSERO_RS22680 at 5201.216 kb on - strand, within HSERO_RS22680 at 5201.234 kb on - strand, within HSERO_RS22680 at 5201.264 kb on + strand, within HSERO_RS22680 at 5201.304 kb on + strand, within HSERO_RS22680 at 5201.306 kb on + strand, within HSERO_RS22680 at 5201.398 kb on - strand, within HSERO_RS22680 at 5201.535 kb on - strand, within HSERO_RS22680 at 5201.535 kb on - strand, within HSERO_RS22680 at 5201.584 kb on - strand, within HSERO_RS22680 at 5201.608 kb on - strand, within HSERO_RS22680 at 5201.635 kb on - strand, within HSERO_RS22680 at 5201.637 kb on + strand, within HSERO_RS22680
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,197,948 + HSERO_RS22670 0.42 -0.9 5,198,242 - HSERO_RS22670 0.62 -0.0 5,198,243 + HSERO_RS22670 0.62 -0.3 5,198,449 + HSERO_RS22670 0.76 +0.2 5,198,522 + HSERO_RS22670 0.81 +2.1 5,198,532 + HSERO_RS22670 0.82 +0.6 5,198,595 - HSERO_RS22670 0.86 +0.6 5,198,618 + HSERO_RS22670 0.88 +0.1 5,198,684 - +0.6 5,198,742 + -0.4 5,198,742 + +0.4 5,198,742 + +0.4 5,199,000 - -0.3 5,199,093 + HSERO_RS22675 0.13 -1.8 5,199,116 + HSERO_RS22675 0.14 -0.5 5,199,213 - HSERO_RS22675 0.20 -0.8 5,199,459 + HSERO_RS22675 0.33 +0.8 5,199,487 + HSERO_RS22675 0.35 +0.9 5,199,599 + HSERO_RS22675 0.41 -0.3 5,199,624 - HSERO_RS22675 0.43 +0.3 5,199,722 - HSERO_RS22675 0.48 +0.1 5,199,774 + HSERO_RS22675 0.51 +0.1 5,199,847 + HSERO_RS22675 0.55 +0.3 5,200,072 + HSERO_RS22675 0.68 +0.4 5,200,079 - HSERO_RS22675 0.68 +1.4 5,200,276 + HSERO_RS22675 0.79 +0.5 5,200,284 - HSERO_RS22675 0.79 +0.2 5,200,534 + -0.6 5,200,562 - -0.0 5,200,584 - +1.3 5,200,620 + -0.7 5,200,620 + -0.3 5,200,628 - -1.3 5,200,690 + +0.2 5,200,693 + +0.0 5,200,695 + -0.4 5,200,737 - +0.2 5,201,009 + +0.2 5,201,087 + HSERO_RS22680 0.14 -1.2 5,201,155 - HSERO_RS22680 0.18 -0.6 5,201,216 - HSERO_RS22680 0.22 -0.9 5,201,234 - HSERO_RS22680 0.23 -0.3 5,201,264 + HSERO_RS22680 0.25 -2.5 5,201,304 + HSERO_RS22680 0.28 +0.0 5,201,306 + HSERO_RS22680 0.28 +0.1 5,201,398 - HSERO_RS22680 0.33 -0.2 5,201,535 - HSERO_RS22680 0.42 +0.8 5,201,535 - HSERO_RS22680 0.42 +0.2 5,201,584 - HSERO_RS22680 0.45 +0.4 5,201,608 - HSERO_RS22680 0.46 +0.5 5,201,635 - HSERO_RS22680 0.48 -0.6 5,201,637 + HSERO_RS22680 0.48 +1.2
Or see this region's nucleotide sequence