Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09625

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09615 and HSERO_RS09620 are separated by 81 nucleotidesHSERO_RS09620 and HSERO_RS09625 are separated by 91 nucleotidesHSERO_RS09625 and HSERO_RS09630 are separated by 79 nucleotidesHSERO_RS09630 and HSERO_RS09635 are separated by 1 nucleotides HSERO_RS09615: HSERO_RS09615 - 3-oxoacyl-ACP synthase, at 2,183,835 to 2,185,076 _RS09615 HSERO_RS09620: HSERO_RS09620 - flagellar hook-length control protein, at 2,185,158 to 2,185,658 _RS09620 HSERO_RS09625: HSERO_RS09625 - RNA polymerase sigma factor RpoE, at 2,185,750 to 2,186,352 _RS09625 HSERO_RS09630: HSERO_RS09630 - sigma-E factor negative regulatory transcription regulator protein, at 2,186,432 to 2,187,130 _RS09630 HSERO_RS09635: HSERO_RS09635 - transcriptional regulator, at 2,187,132 to 2,188,148 _RS09635 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -1 0 1at 2185.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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2,185,700 - +0.7

Or see this region's nucleotide sequence