Strain Fitness in Sinorhizobium meliloti 1021 around SMc03185

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03182 and SMc03183 overlap by 4 nucleotidesSMc03183 and SMc03184 overlap by 4 nucleotidesSMc03184 and SMc03185 are separated by 0 nucleotidesSMc03185 and SMc03186 are separated by 92 nucleotides SMc03182: SMc03182 - pH adaptation potassium efflux system E transmembrane protein, at 3,148,690 to 3,149,175 SMc03182 SMc03183: SMc03183 - monovalent cation/H+ antiporter subunit F, at 3,149,172 to 3,149,453 SMc03183 SMc03184: SMc03184 - PH adaptation potassium efflux system G transmembrane protein, at 3,149,450 to 3,149,815 SMc03184 SMc03185: SMc03185 - NADPH dehydrogenase quinone reductase transmembrane protein, at 3,149,816 to 3,150,628 SMc03185 SMc03186: SMc03186 - transcriptional regulator, at 3,150,721 to 3,151,653 SMc03186 Position (kb) 3149 3150 3151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3149.062 kb on + strand, within SMc03182at 3149.062 kb on + strand, within SMc03182at 3149.063 kb on - strand, within SMc03182at 3149.165 kb on + strandat 3149.166 kb on - strandat 3149.248 kb on - strand, within SMc03183at 3149.304 kb on + strand, within SMc03183at 3149.304 kb on + strand, within SMc03183at 3149.305 kb on - strand, within SMc03183at 3149.361 kb on + strand, within SMc03183at 3149.361 kb on + strand, within SMc03183at 3149.667 kb on + strand, within SMc03184at 3149.748 kb on - strand, within SMc03184at 3149.813 kb on + strandat 3149.813 kb on + strandat 3149.813 kb on + strandat 3149.814 kb on - strandat 3149.814 kb on - strandat 3149.817 kb on + strandat 3149.818 kb on - strandat 3149.818 kb on - strandat 3149.818 kb on - strandat 3149.925 kb on + strand, within SMc03185at 3149.926 kb on - strand, within SMc03185at 3149.926 kb on - strand, within SMc03185at 3150.045 kb on + strand, within SMc03185at 3150.084 kb on + strand, within SMc03185at 3150.084 kb on + strand, within SMc03185at 3150.151 kb on - strand, within SMc03185at 3150.151 kb on - strand, within SMc03185at 3150.245 kb on - strand, within SMc03185at 3150.261 kb on + strand, within SMc03185at 3150.387 kb on - strand, within SMc03185at 3150.511 kb on - strand, within SMc03185at 3150.661 kb on - strandat 3150.665 kb on - strandat 3150.719 kb on + strandat 3150.831 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3151.361 kb on - strand, within SMc03186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
3,149,062 + SMc03182 0.77 -0.7
3,149,062 + SMc03182 0.77 -2.1
3,149,063 - SMc03182 0.77 +2.3
3,149,165 + +0.1
3,149,166 - +0.1
3,149,248 - SMc03183 0.27 -0.4
3,149,304 + SMc03183 0.47 +1.6
3,149,304 + SMc03183 0.47 +0.5
3,149,305 - SMc03183 0.47 -1.1
3,149,361 + SMc03183 0.67 -2.3
3,149,361 + SMc03183 0.67 +0.4
3,149,667 + SMc03184 0.59 -2.7
3,149,748 - SMc03184 0.81 -2.2
3,149,813 + +1.1
3,149,813 + +0.1
3,149,813 + -2.1
3,149,814 - +0.0
3,149,814 - -1.2
3,149,817 + +0.6
3,149,818 - +2.1
3,149,818 - -1.6
3,149,818 - -3.4
3,149,925 + SMc03185 0.13 +0.6
3,149,926 - SMc03185 0.14 +0.7
3,149,926 - SMc03185 0.14 +1.6
3,150,045 + SMc03185 0.28 -0.0
3,150,084 + SMc03185 0.33 -0.0
3,150,084 + SMc03185 0.33 -0.3
3,150,151 - SMc03185 0.41 -1.9
3,150,151 - SMc03185 0.41 +1.8
3,150,245 - SMc03185 0.53 -0.3
3,150,261 + SMc03185 0.55 -2.6
3,150,387 - SMc03185 0.70 +0.2
3,150,511 - SMc03185 0.85 -1.0
3,150,661 - -0.7
3,150,665 - +0.4
3,150,719 + -2.2
3,150,831 - SMc03186 0.12 -2.2
3,150,926 - SMc03186 0.22 +1.3
3,150,926 - SMc03186 0.22 +0.9
3,150,926 - SMc03186 0.22 -0.3
3,151,361 - SMc03186 0.69 +0.4

Or see this region's nucleotide sequence