Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03072 and SMc03057 overlap by 1 nucleotides SMc03057 and SMc03058 are separated by 34 nucleotides SMc03058 and SMc03059 are separated by 318 nucleotides
SMc03072: SMc03072 - hypothetical protein, at 752,633 to 753,001
SMc03072
SMc03057: SMc03057 - hypothetical protein, at 753,001 to 753,567
SMc03057
SMc03058: SMc03058 - glycosyltransferase, at 753,602 to 754,591
SMc03058
SMc03059: SMc03059 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 754,910 to 755,809
SMc03059
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 752.619 kb on + strand at 752.619 kb on + strand at 752.632 kb on + strand at 752.777 kb on + strand, within SMc03072 at 752.778 kb on - strand, within SMc03072 at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.968 kb on + strand at 752.968 kb on + strand at 753.058 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.149 kb on + strand, within SMc03057 at 753.187 kb on + strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.229 kb on - strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.278 kb on - strand, within SMc03057 at 753.424 kb on + strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.475 kb on + strand, within SMc03057 at 753.644 kb on + strand at 753.758 kb on + strand, within SMc03058 at 753.758 kb on + strand, within SMc03058 at 753.759 kb on - strand, within SMc03058 at 753.972 kb on - strand, within SMc03058 at 753.983 kb on - strand, within SMc03058 at 754.060 kb on - strand, within SMc03058 at 754.230 kb on - strand, within SMc03058 at 754.242 kb on + strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.624 kb on + strand at 754.625 kb on - strand at 754.625 kb on - strand at 754.816 kb on - strand at 754.833 kb on + strand at 754.833 kb on + strand at 754.871 kb on + strand at 754.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 752,619 + -0.8 752,619 + -0.0 752,632 + +0.4 752,777 + SMc03072 0.39 -1.3 752,778 - SMc03072 0.39 -2.7 752,967 - -0.2 752,967 - -0.6 752,967 - +0.8 752,967 - +1.3 752,968 + -0.1 752,968 + -1.9 753,058 + SMc03057 0.10 -0.7 753,130 + SMc03057 0.23 +0.6 753,130 + SMc03057 0.23 -0.4 753,130 + SMc03057 0.23 -1.3 753,130 + SMc03057 0.23 +0.4 753,130 + SMc03057 0.23 -2.2 753,131 - SMc03057 0.23 +0.3 753,131 - SMc03057 0.23 -0.3 753,131 - SMc03057 0.23 +1.2 753,131 - SMc03057 0.23 -2.1 753,149 + SMc03057 0.26 -0.8 753,187 + SMc03057 0.33 +1.3 753,188 - SMc03057 0.33 -1.8 753,188 - SMc03057 0.33 +1.2 753,229 - SMc03057 0.40 +0.9 753,277 + SMc03057 0.49 +0.3 753,277 + SMc03057 0.49 +0.7 753,278 - SMc03057 0.49 +0.3 753,424 + SMc03057 0.75 -0.6 753,425 - SMc03057 0.75 +1.3 753,425 - SMc03057 0.75 +0.8 753,475 + SMc03057 0.84 +1.2 753,644 + +3.0 753,758 + SMc03058 0.16 -0.2 753,758 + SMc03058 0.16 -1.5 753,759 - SMc03058 0.16 -2.8 753,972 - SMc03058 0.37 -2.0 753,983 - SMc03058 0.38 -0.7 754,060 - SMc03058 0.46 +0.2 754,230 - SMc03058 0.63 +0.8 754,242 + SMc03058 0.65 -0.2 754,243 - SMc03058 0.65 +1.4 754,243 - SMc03058 0.65 -0.7 754,624 + -0.4 754,625 - +0.9 754,625 - +0.7 754,816 - +1.3 754,833 + +0.1 754,833 + -0.3 754,871 + +2.6 754,871 + +1.5
Or see this region's nucleotide sequence