Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03054 and SMc03055 overlap by 4 nucleotides SMc03055 and SMc03056 are separated by 4 nucleotides SMc03056 and SMc03071 are separated by 98 nucleotides SMc03071 and SMc03072 are separated by 125 nucleotides
SMc03054: SMc03054 - flagellar biosynthesis protein FlhA, at 748,600 to 750,687
SMc03054
SMc03055: SMc03055 - flagellar biosynthesis protein FliR, at 750,684 to 751,436
SMc03055
SMc03056: SMc03056 - hypothetical protein, at 751,441 to 751,854
SMc03056
SMc03071: SMc03071 - hypothetical protein, at 751,953 to 752,507
SMc03071
SMc03072: SMc03072 - hypothetical protein, at 752,633 to 753,001
SMc03072
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 750.519 kb on - strand at 750.560 kb on + strand at 750.560 kb on + strand at 750.561 kb on - strand at 750.583 kb on + strand at 750.583 kb on + strand at 750.583 kb on + strand at 750.584 kb on - strand at 750.584 kb on - strand at 750.858 kb on + strand, within SMc03055 at 750.859 kb on - strand, within SMc03055 at 750.859 kb on - strand, within SMc03055 at 750.888 kb on + strand, within SMc03055 at 750.894 kb on + strand, within SMc03055 at 750.894 kb on + strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.895 kb on - strand, within SMc03055 at 750.949 kb on - strand, within SMc03055 at 750.949 kb on - strand, within SMc03055 at 750.951 kb on + strand, within SMc03055 at 750.951 kb on + strand, within SMc03055 at 750.952 kb on - strand, within SMc03055 at 750.952 kb on - strand, within SMc03055 at 751.037 kb on + strand, within SMc03055 at 751.257 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.312 kb on + strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.313 kb on - strand, within SMc03055 at 751.320 kb on + strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.321 kb on - strand, within SMc03055 at 751.338 kb on + strand, within SMc03055 at 751.339 kb on - strand, within SMc03055 at 751.621 kb on + strand, within SMc03056 at 751.621 kb on + strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.622 kb on - strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.695 kb on + strand, within SMc03056 at 751.696 kb on - strand, within SMc03056 at 751.836 kb on + strand at 751.852 kb on + strand at 751.853 kb on - strand at 751.855 kb on + strand at 751.952 kb on + strand at 751.953 kb on - strand at 751.953 kb on - strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.958 kb on + strand at 751.959 kb on - strand at 751.959 kb on - strand at 752.368 kb on + strand, within SMc03071 at 752.448 kb on + strand, within SMc03071 at 752.449 kb on - strand, within SMc03071 at 752.544 kb on + strand at 752.545 kb on - strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.553 kb on - strand at 752.619 kb on + strand at 752.619 kb on + strand at 752.632 kb on + strand at 752.777 kb on + strand, within SMc03072 at 752.778 kb on - strand, within SMc03072
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 750,519 - -1.6 750,560 + -1.3 750,560 + -1.4 750,561 - +1.4 750,583 + -0.6 750,583 + -0.3 750,583 + -3.6 750,584 - -0.7 750,584 - +0.3 750,858 + SMc03055 0.23 +0.8 750,859 - SMc03055 0.23 -1.1 750,859 - SMc03055 0.23 -0.2 750,888 + SMc03055 0.27 -0.1 750,894 + SMc03055 0.28 -0.1 750,894 + SMc03055 0.28 -2.3 750,895 - SMc03055 0.28 +0.9 750,895 - SMc03055 0.28 +1.3 750,895 - SMc03055 0.28 +0.9 750,949 - SMc03055 0.35 -0.7 750,949 - SMc03055 0.35 +0.8 750,951 + SMc03055 0.35 -0.5 750,951 + SMc03055 0.35 -1.5 750,952 - SMc03055 0.36 -1.0 750,952 - SMc03055 0.36 -0.5 751,037 + SMc03055 0.47 -0.4 751,257 + SMc03055 0.76 -1.0 751,312 + SMc03055 0.83 +0.5 751,312 + SMc03055 0.83 +0.4 751,313 - SMc03055 0.84 +1.2 751,313 - SMc03055 0.84 -0.3 751,320 + SMc03055 0.84 -3.3 751,321 - SMc03055 0.85 +1.0 751,321 - SMc03055 0.85 -2.8 751,338 + SMc03055 0.87 +0.3 751,339 - SMc03055 0.87 -1.3 751,621 + SMc03056 0.43 -2.2 751,621 + SMc03056 0.43 +1.0 751,622 - SMc03056 0.44 -0.3 751,622 - SMc03056 0.44 -0.9 751,622 - SMc03056 0.44 +0.6 751,695 + SMc03056 0.61 -1.4 751,695 + SMc03056 0.61 -0.2 751,696 - SMc03056 0.62 +0.2 751,836 + -3.1 751,852 + -0.2 751,853 - -1.1 751,855 + -0.3 751,952 + -0.3 751,953 - -2.2 751,953 - -0.1 751,958 + +1.2 751,958 + +0.4 751,958 + -2.8 751,959 - +0.2 751,959 - +1.3 752,368 + SMc03071 0.75 -0.1 752,448 + SMc03071 0.89 -1.3 752,449 - SMc03071 0.89 -0.3 752,544 + -0.2 752,545 - +1.0 752,552 + -3.2 752,552 + -0.3 752,552 + -0.8 752,553 - +0.1 752,619 + -0.8 752,619 + -0.0 752,632 + +0.4 752,777 + SMc03072 0.39 -1.3 752,778 - SMc03072 0.39 -2.7
Or see this region's nucleotide sequence