Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03019 and SMc03020 are separated by 87 nucleotides SMc03020 and SMc03021 are separated by 19 nucleotides SMc03021 and SMc03022 are separated by 1 nucleotides
SMc03019: SMc03019 - flagellar motor switch protein G, at 717,324 to 718,361
SMc03019
SMc03020: SMc03020 - flagellar motor switch protein, at 718,449 to 719,081
SMc03020
SMc03021: SMc03021 - flagellar motor switch transmembrane protein, at 719,101 to 720,048
SMc03021
SMc03022: SMc03022 - flagellar motor protein MotA, at 720,050 to 720,928
SMc03022
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 717.624 kb on + strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.925 kb on + strand, within SMc03019 at 717.926 kb on - strand, within SMc03019 at 718.450 kb on + strand at 719.165 kb on + strand at 719.166 kb on - strand at 719.198 kb on + strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.199 kb on - strand, within SMc03021 at 719.639 kb on - strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.695 kb on + strand, within SMc03021 at 719.696 kb on - strand, within SMc03021 at 719.867 kb on + strand, within SMc03021
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 717,624 + SMc03019 0.29 +1.2 717,625 - SMc03019 0.29 -3.4 717,625 - SMc03019 0.29 -1.9 717,625 - SMc03019 0.29 -0.4 717,925 + SMc03019 0.58 +0.7 717,926 - SMc03019 0.58 -3.1 718,450 + -0.3 719,165 + +0.2 719,166 - -1.5 719,198 + SMc03021 0.10 -1.6 719,199 - SMc03021 0.10 +1.5 719,199 - SMc03021 0.10 -0.3 719,639 - SMc03021 0.57 +0.4 719,695 + SMc03021 0.63 -0.8 719,695 + SMc03021 0.63 -0.8 719,695 + SMc03021 0.63 -2.6 719,695 + SMc03021 0.63 +0.4 719,695 + SMc03021 0.63 -1.4 719,695 + SMc03021 0.63 -2.3 719,696 - SMc03021 0.63 +1.9 719,867 + SMc03021 0.81 +0.3
Or see this region's nucleotide sequence