Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03016 and SMc03017 are separated by 8 nucleotides SMc03017 and SMc03018 overlap by 4 nucleotides SMc03018 and SMc03019 are separated by 211 nucleotides
SMc03016: SMc03016 - transcriptional regulator, at 714,838 to 715,578
SMc03016
SMc03017: SMc03017 - hypothetical protein, at 715,587 to 716,033
SMc03017
SMc03018: SMc03018 - flagellar biosynthesis protein FlhB, at 716,030 to 717,112
SMc03018
SMc03019: SMc03019 - flagellar motor switch protein G, at 717,324 to 718,361
SMc03019
Position (kb) 716
717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 715.261 kb on + strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.283 kb on - strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.567 kb on + strand at 715.568 kb on - strand at 715.569 kb on + strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.659 kb on - strand, within SMc03017 at 715.722 kb on - strand, within SMc03017 at 715.817 kb on + strand, within SMc03017 at 715.818 kb on - strand at 715.819 kb on + strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.862 kb on - strand, within SMc03017 at 715.903 kb on + strand, within SMc03017 at 715.958 kb on - strand, within SMc03017 at 715.990 kb on - strand at 715.990 kb on - strand at 716.065 kb on - strand at 716.233 kb on + strand, within SMc03018 at 716.234 kb on - strand, within SMc03018 at 716.271 kb on + strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.282 kb on + strand, within SMc03018 at 716.290 kb on - strand, within SMc03018 at 716.457 kb on + strand, within SMc03018 at 716.458 kb on - strand, within SMc03018 at 716.604 kb on + strand, within SMc03018 at 716.649 kb on - strand, within SMc03018 at 716.694 kb on + strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.887 kb on + strand, within SMc03018 at 717.085 kb on + strand at 717.303 kb on + strand at 717.303 kb on + strand at 717.304 kb on - strand at 717.305 kb on + strand at 717.306 kb on - strand at 717.624 kb on + strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.925 kb on + strand, within SMc03019 at 717.926 kb on - strand, within SMc03019
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 715,261 + SMc03016 0.57 +0.1 715,262 - SMc03016 0.57 +0.9 715,262 - SMc03016 0.57 -2.1 715,283 - SMc03016 0.60 +0.7 715,437 + SMc03016 0.81 +1.1 715,437 + SMc03016 0.81 +0.6 715,492 + SMc03016 0.88 +1.3 715,492 + SMc03016 0.88 +1.1 715,493 - SMc03016 0.88 -0.1 715,493 - SMc03016 0.88 -1.3 715,493 - SMc03016 0.88 +2.4 715,567 + -2.3 715,568 - +0.9 715,569 + -0.5 715,570 - +0.7 715,570 - +0.3 715,570 - -0.5 715,659 - SMc03017 0.16 +0.7 715,722 - SMc03017 0.30 -0.2 715,817 + SMc03017 0.51 -2.2 715,818 - +1.2 715,819 + SMc03017 0.52 -1.0 715,820 - SMc03017 0.52 -3.7 715,820 - SMc03017 0.52 +0.1 715,861 + SMc03017 0.61 +0.1 715,861 + SMc03017 0.61 -0.3 715,861 + SMc03017 0.61 -0.3 715,862 - SMc03017 0.62 -0.1 715,903 + SMc03017 0.71 +2.5 715,958 - SMc03017 0.83 -1.3 715,990 - +1.6 715,990 - -0.5 716,065 - +1.2 716,233 + SMc03018 0.19 +4.5 716,234 - SMc03018 0.19 +1.5 716,271 + SMc03018 0.22 -0.2 716,272 - SMc03018 0.22 -0.5 716,272 - SMc03018 0.22 +0.9 716,282 + SMc03018 0.23 -0.3 716,290 - SMc03018 0.24 -0.7 716,457 + SMc03018 0.39 -0.6 716,458 - SMc03018 0.40 -2.4 716,604 + SMc03018 0.53 -0.2 716,649 - SMc03018 0.57 -0.6 716,694 + SMc03018 0.61 -0.6 716,695 - SMc03018 0.61 +0.7 716,695 - SMc03018 0.61 +0.3 716,887 + SMc03018 0.79 +0.5 717,085 + -0.0 717,303 + +0.0 717,303 + +0.6 717,304 - +2.5 717,305 + -0.4 717,306 - +0.7 717,624 + SMc03019 0.29 +1.2 717,625 - SMc03019 0.29 -3.4 717,625 - SMc03019 0.29 -1.9 717,625 - SMc03019 0.29 -0.4 717,925 + SMc03019 0.58 +0.7 717,926 - SMc03019 0.58 -3.1
Or see this region's nucleotide sequence