Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02884 and SMc02885 are separated by 284 nucleotides SMc02885 and SMc02886 are separated by 52 nucleotides SMc02886 and SMc02915 are separated by 229 nucleotides SMc02915 and SMc02887 are separated by 89 nucleotides SMc02887 and SMc05001 overlap by 121 nucleotides SMc05001 and SMc02888 are separated by 87 nucleotides
SMc02884: SMc02884 - lipoprotein, at 240,021 to 241,013
SMc02884
SMc02885: SMc02885 - methionine sulfoxide reductase A, at 241,298 to 241,951
SMc02885
SMc02886: SMc02886 - signal peptide protein, at 242,004 to 242,321
SMc02886
SMc02915: SMc02915 - tRNA-Ser, at 242,551 to 242,640
SMc02915
SMc02887: SMc02887 - hypothetical protein, at 242,730 to 242,894
SMc02887
SMc05001: SMc05001 - hypothetical protein, at 242,774 to 243,064
SMc05001
SMc02888: SMc02888 - transcriptional regulator, at 243,152 to 244,174
SMc02888
Position (kb) 242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.016 kb on + strand at 241.017 kb on - strand at 241.017 kb on - strand at 241.235 kb on - strand at 241.250 kb on + strand at 241.250 kb on + strand at 241.250 kb on + strand at 241.251 kb on - strand at 241.258 kb on - strand at 241.258 kb on - strand at 241.398 kb on - strand, within SMc02885 at 241.446 kb on + strand, within SMc02885 at 241.446 kb on + strand, within SMc02885 at 241.447 kb on - strand, within SMc02885 at 241.513 kb on - strand, within SMc02885 at 241.513 kb on - strand, within SMc02885 at 241.518 kb on + strand, within SMc02885 at 241.519 kb on - strand, within SMc02885 at 241.534 kb on - strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.635 kb on + strand, within SMc02885 at 241.636 kb on - strand, within SMc02885 at 241.636 kb on - strand, within SMc02885 at 241.738 kb on - strand, within SMc02885 at 241.789 kb on + strand, within SMc02885 at 241.789 kb on + strand, within SMc02885 at 242.080 kb on - strand, within SMc02886 at 242.196 kb on + strand, within SMc02886 at 242.197 kb on - strand, within SMc02886 at 242.357 kb on - strand at 242.418 kb on + strand at 242.418 kb on + strand at 242.418 kb on + strand at 242.421 kb on + strand at 242.421 kb on + strand at 242.422 kb on - strand at 242.422 kb on - strand at 242.701 kb on + strand at 242.701 kb on + strand at 242.702 kb on - strand at 242.902 kb on + strand, within SMc05001 at 242.903 kb on - strand, within SMc05001 at 242.918 kb on + strand, within SMc05001 at 242.918 kb on + strand, within SMc05001 at 242.919 kb on - strand, within SMc05001 at 242.919 kb on - strand, within SMc05001 at 243.070 kb on + strand at 243.070 kb on + strand at 243.070 kb on + strand at 243.071 kb on - strand at 243.071 kb on - strand at 243.277 kb on - strand, within SMc02888 at 243.293 kb on + strand, within SMc02888 at 243.293 kb on + strand, within SMc02888 at 243.294 kb on - strand, within SMc02888 at 243.294 kb on - strand, within SMc02888
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 241,016 + +2.4 241,017 - -0.5 241,017 - +1.0 241,235 - +0.7 241,250 + -0.7 241,250 + -1.2 241,250 + +0.5 241,251 - -1.5 241,258 - +0.7 241,258 - -1.0 241,398 - SMc02885 0.15 -2.2 241,446 + SMc02885 0.23 +0.7 241,446 + SMc02885 0.23 -0.6 241,447 - SMc02885 0.23 -2.5 241,513 - SMc02885 0.33 +0.7 241,513 - SMc02885 0.33 -3.0 241,518 + SMc02885 0.34 -1.1 241,519 - SMc02885 0.34 -1.0 241,534 - SMc02885 0.36 +1.9 241,635 + SMc02885 0.52 -1.6 241,635 + SMc02885 0.52 -2.8 241,635 + SMc02885 0.52 -0.7 241,636 - SMc02885 0.52 -2.6 241,636 - SMc02885 0.52 -0.7 241,738 - SMc02885 0.67 +0.5 241,789 + SMc02885 0.75 +0.3 241,789 + SMc02885 0.75 -2.6 242,080 - SMc02886 0.24 -1.7 242,196 + SMc02886 0.60 -1.5 242,197 - SMc02886 0.61 -0.1 242,357 - +1.2 242,418 + +0.9 242,418 + +0.9 242,418 + +1.8 242,421 + -0.3 242,421 + +0.8 242,422 - +1.5 242,422 - -2.1 242,701 + -0.2 242,701 + -1.9 242,702 - +0.5 242,902 + SMc05001 0.44 -0.5 242,903 - SMc05001 0.44 +0.0 242,918 + SMc05001 0.49 +0.3 242,918 + SMc05001 0.49 +0.5 242,919 - SMc05001 0.50 +0.7 242,919 - SMc05001 0.50 +0.6 243,070 + +1.0 243,070 + +0.4 243,070 + -1.3 243,071 - +0.8 243,071 - +1.3 243,277 - SMc02888 0.12 +0.5 243,293 + SMc02888 0.14 +0.8 243,293 + SMc02888 0.14 +0.3 243,294 - SMc02888 0.14 -0.5 243,294 - SMc02888 0.14 +1.0
Or see this region's nucleotide sequence