Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02265 and SMc02266 are separated by 548 nucleotides SMc02266 and SMc02267 are separated by 236 nucleotides SMc02267 and SMc02268 are separated by 183 nucleotides
SMc02265: SMc02265 - preprotein translocase subunit SecD/SecF, at 630,110 to 632,644
SMc02265
SMc02266: SMc02266 - hypothetical protein, at 633,193 to 633,411
SMc02266
SMc02267: SMc02267 - hypothetical protein, at 633,648 to 634,103
SMc02267
SMc02268: SMc02268 - capsule expression protein, at 634,287 to 635,300
SMc02268
Position (kb) 633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 632.734 kb on - strand at 632.770 kb on + strand at 632.806 kb on + strand at 632.810 kb on + strand at 632.810 kb on + strand at 632.811 kb on - strand at 632.814 kb on + strand at 632.994 kb on + strand at 633.082 kb on - strand at 633.214 kb on + strand at 633.281 kb on - strand, within SMc02266 at 633.479 kb on + strand at 633.479 kb on + strand at 633.480 kb on - strand at 633.547 kb on + strand at 633.547 kb on + strand at 633.547 kb on + strand at 633.547 kb on + strand at 633.548 kb on - strand at 633.549 kb on + strand at 633.549 kb on + strand at 633.558 kb on - strand at 633.558 kb on - strand at 633.776 kb on + strand, within SMc02267 at 633.776 kb on + strand, within SMc02267 at 633.776 kb on + strand, within SMc02267 at 633.779 kb on - strand, within SMc02267 at 633.837 kb on + strand, within SMc02267 at 633.838 kb on - strand, within SMc02267 at 633.838 kb on - strand, within SMc02267 at 633.883 kb on + strand, within SMc02267 at 633.883 kb on + strand, within SMc02267 at 633.883 kb on + strand, within SMc02267 at 633.883 kb on + strand, within SMc02267 at 633.884 kb on - strand, within SMc02267 at 633.884 kb on - strand, within SMc02267 at 634.137 kb on - strand at 634.178 kb on + strand at 634.179 kb on - strand at 634.179 kb on - strand at 634.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 632,734 - -1.1 632,770 + +0.5 632,806 + +0.9 632,810 + -0.4 632,810 + +0.7 632,811 - -0.7 632,814 + +2.5 632,994 + +0.5 633,082 - +0.0 633,214 + -1.9 633,281 - SMc02266 0.40 -1.8 633,479 + -2.5 633,479 + -1.9 633,480 - -2.2 633,547 + +0.4 633,547 + +1.1 633,547 + +0.5 633,547 + +0.4 633,548 - +0.9 633,549 + -0.6 633,549 + -0.7 633,558 - +0.3 633,558 - -2.9 633,776 + SMc02267 0.28 +0.9 633,776 + SMc02267 0.28 -0.5 633,776 + SMc02267 0.28 +0.6 633,779 - SMc02267 0.29 +0.0 633,837 + SMc02267 0.41 -0.9 633,838 - SMc02267 0.42 -1.4 633,838 - SMc02267 0.42 +0.8 633,883 + SMc02267 0.52 +0.2 633,883 + SMc02267 0.52 +0.1 633,883 + SMc02267 0.52 +2.0 633,883 + SMc02267 0.52 -0.0 633,884 - SMc02267 0.52 -1.9 633,884 - SMc02267 0.52 -2.6 634,137 - +0.2 634,178 + -1.2 634,179 - -1.1 634,179 - -0.9 634,227 + +0.2
Or see this region's nucleotide sequence