Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02236 and SMc02237 are separated by 243 nucleotides SMc02237 and SMc02238 are separated by 107 nucleotides SMc02238 and SMc02239 are separated by 38 nucleotides
SMc02236: SMc02236 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 599,879 to 600,607
SMc02236
SMc02237: SMc02237 - DNA damage response helicase, ligase-associated <small>(from data)</small>, at 600,851 to 603,400
SMc02237
SMc02238: SMc02238 - hypothetical protein, at 603,508 to 604,014
SMc02238
SMc02239: SMc02239 - hypothetical protein, at 604,053 to 604,514
SMc02239
Position (kb) 600
601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 599.910 kb on + strand at 599.911 kb on - strand at 599.911 kb on - strand at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.401 kb on - strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.495 kb on + strand, within SMc02236 at 600.495 kb on + strand, within SMc02236 at 600.496 kb on - strand, within SMc02236 at 600.496 kb on - strand, within SMc02236 at 600.496 kb on - strand, within SMc02236 at 600.586 kb on - strand at 600.667 kb on - strand at 600.709 kb on + strand at 600.843 kb on + strand at 600.843 kb on + strand at 600.843 kb on + strand at 600.843 kb on + strand at 600.844 kb on - strand at 600.844 kb on - strand at 600.863 kb on - strand at 601.012 kb on + strand at 601.127 kb on + strand, within SMc02237 at 601.128 kb on - strand, within SMc02237 at 601.128 kb on - strand, within SMc02237 at 601.135 kb on - strand, within SMc02237 at 601.158 kb on - strand, within SMc02237 at 601.203 kb on - strand, within SMc02237 at 601.235 kb on - strand, within SMc02237 at 601.235 kb on - strand, within SMc02237 at 601.235 kb on - strand, within SMc02237 at 601.289 kb on - strand, within SMc02237 at 601.476 kb on + strand, within SMc02237 at 601.477 kb on - strand, within SMc02237 at 601.477 kb on - strand, within SMc02237 at 601.477 kb on - strand, within SMc02237 at 601.477 kb on - strand, within SMc02237 at 601.477 kb on - strand, within SMc02237 at 601.488 kb on + strand, within SMc02237 at 601.488 kb on + strand, within SMc02237 at 601.489 kb on - strand, within SMc02237 at 601.489 kb on - strand, within SMc02237 at 601.489 kb on - strand, within SMc02237 at 601.489 kb on - strand, within SMc02237 at 601.647 kb on + strand, within SMc02237 at 601.647 kb on + strand, within SMc02237 at 601.647 kb on + strand at 601.648 kb on - strand, within SMc02237 at 601.924 kb on - strand, within SMc02237 at 601.990 kb on - strand, within SMc02237 at 601.998 kb on + strand, within SMc02237 at 601.998 kb on + strand, within SMc02237 at 601.998 kb on + strand, within SMc02237 at 601.998 kb on + strand, within SMc02237 at 601.999 kb on - strand, within SMc02237 at 601.999 kb on - strand, within SMc02237 at 601.999 kb on - strand, within SMc02237 at 602.074 kb on - strand, within SMc02237 at 602.100 kb on + strand, within SMc02237 at 602.100 kb on + strand, within SMc02237 at 602.101 kb on - strand, within SMc02237 at 602.101 kb on - strand, within SMc02237 at 602.209 kb on - strand, within SMc02237 at 602.394 kb on - strand, within SMc02237 at 602.394 kb on - strand, within SMc02237 at 602.394 kb on - strand, within SMc02237 at 602.779 kb on + strand, within SMc02237 at 602.843 kb on + strand, within SMc02237 at 602.975 kb on + strand, within SMc02237 at 602.975 kb on + strand, within SMc02237 at 602.975 kb on + strand, within SMc02237 at 602.976 kb on - strand, within SMc02237 at 603.127 kb on - strand, within SMc02237 at 603.127 kb on - strand, within SMc02237 at 603.405 kb on - strand at 603.629 kb on - strand, within SMc02238 at 604.095 kb on + strand at 604.095 kb on + strand at 604.096 kb on - strand at 604.096 kb on - strand at 604.122 kb on + strand, within SMc02239 at 604.122 kb on + strand, within SMc02239 at 604.123 kb on - strand, within SMc02239 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand at 604.374 kb on + strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 599,910 + +0.3 599,911 - +0.2 599,911 - -0.0 600,400 + SMc02236 0.71 -0.3 600,400 + SMc02236 0.71 +2.6 600,400 + SMc02236 0.71 +0.3 600,401 - SMc02236 0.72 +3.3 600,405 + SMc02236 0.72 +0.8 600,405 + SMc02236 0.72 +1.2 600,405 + SMc02236 0.72 +1.3 600,495 + SMc02236 0.84 -0.4 600,495 + SMc02236 0.84 -0.1 600,496 - SMc02236 0.85 -0.3 600,496 - SMc02236 0.85 +1.1 600,496 - SMc02236 0.85 -2.0 600,586 - +0.7 600,667 - +0.8 600,709 + +0.2 600,843 + -0.5 600,843 + -0.7 600,843 + +2.1 600,843 + -0.6 600,844 - +1.0 600,844 - +2.3 600,863 - -3.6 601,012 + -0.0 601,127 + SMc02237 0.11 +0.6 601,128 - SMc02237 0.11 +1.0 601,128 - SMc02237 0.11 +0.7 601,135 - SMc02237 0.11 -0.3 601,158 - SMc02237 0.12 +0.4 601,203 - SMc02237 0.14 -2.9 601,235 - SMc02237 0.15 +0.2 601,235 - SMc02237 0.15 -0.5 601,235 - SMc02237 0.15 +0.9 601,289 - SMc02237 0.17 +0.0 601,476 + SMc02237 0.25 +0.4 601,477 - SMc02237 0.25 -1.5 601,477 - SMc02237 0.25 -3.5 601,477 - SMc02237 0.25 +0.7 601,477 - SMc02237 0.25 +0.8 601,477 - SMc02237 0.25 -3.4 601,488 + SMc02237 0.25 +1.1 601,488 + SMc02237 0.25 +1.2 601,489 - SMc02237 0.25 -1.2 601,489 - SMc02237 0.25 -0.1 601,489 - SMc02237 0.25 -0.3 601,489 - SMc02237 0.25 +0.4 601,647 + SMc02237 0.31 +0.9 601,647 + SMc02237 0.31 +2.2 601,647 + -1.1 601,648 - SMc02237 0.31 +0.5 601,924 - SMc02237 0.42 +1.0 601,990 - SMc02237 0.45 -0.7 601,998 + SMc02237 0.45 -0.4 601,998 + SMc02237 0.45 +0.9 601,998 + SMc02237 0.45 -0.6 601,998 + SMc02237 0.45 -0.2 601,999 - SMc02237 0.45 -0.4 601,999 - SMc02237 0.45 -1.5 601,999 - SMc02237 0.45 -0.0 602,074 - SMc02237 0.48 +1.2 602,100 + SMc02237 0.49 +0.7 602,100 + SMc02237 0.49 +0.7 602,101 - SMc02237 0.49 -0.2 602,101 - SMc02237 0.49 +0.1 602,209 - SMc02237 0.53 +0.3 602,394 - SMc02237 0.61 -1.0 602,394 - SMc02237 0.61 -3.9 602,394 - SMc02237 0.61 +2.7 602,779 + SMc02237 0.76 -0.7 602,843 + SMc02237 0.78 +0.3 602,975 + SMc02237 0.83 +0.7 602,975 + SMc02237 0.83 -0.5 602,975 + SMc02237 0.83 +1.4 602,976 - SMc02237 0.83 -0.5 603,127 - SMc02237 0.89 +0.5 603,127 - SMc02237 0.89 -1.0 603,405 - +1.0 603,629 - SMc02238 0.24 +0.4 604,095 + -1.5 604,095 + +1.0 604,096 - +0.1 604,096 - +0.8 604,122 + SMc02239 0.15 -0.3 604,122 + SMc02239 0.15 -1.5 604,123 - SMc02239 0.15 +0.6 604,374 + SMc02239 0.69 -2.4 604,374 + SMc02239 0.69 -1.6 604,374 + +0.7 604,374 + SMc02239 0.69 -0.2 604,375 - SMc02239 0.70 +0.1 604,375 - SMc02239 0.70 +2.5 604,375 - SMc02239 0.70 -2.0
Or see this region's nucleotide sequence