Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02222 and SMc02223 are separated by 9 nucleotides SMc02223 and SMc02224 are separated by 225 nucleotides SMc02224 and SMc02225 are separated by 101 nucleotides SMc02225 and SMc02226 are separated by 124 nucleotides
SMc02222: SMc02222 - hypothetical protein, at 583,799 to 584,605
SMc02222
SMc02223: SMc02223 - transcriptional regulator, at 584,615 to 585,271
SMc02223
SMc02224: SMc02224 - calcium/proton antiporter transmembrane protein, at 585,497 to 586,582
SMc02224
SMc02225: SMc02225 - hypothetical protein, at 586,684 to 587,211
SMc02225
SMc02226: SMc02226 - hypothetical protein, at 587,336 to 587,809
SMc02226
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 584.554 kb on - strand at 584.554 kb on - strand at 584.616 kb on + strand at 584.617 kb on - strand at 584.874 kb on + strand, within SMc02223 at 584.874 kb on + strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 585.095 kb on + strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.338 kb on - strand at 585.383 kb on - strand at 585.412 kb on + strand at 585.412 kb on + strand at 585.464 kb on + strand at 585.464 kb on + strand at 585.800 kb on - strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.889 kb on + strand, within SMc02224 at 585.912 kb on - strand, within SMc02224 at 585.986 kb on + strand, within SMc02224 at 585.987 kb on - strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.026 kb on - strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.028 kb on - strand, within SMc02224 at 586.064 kb on + strand, within SMc02224 at 586.076 kb on + strand, within SMc02224 at 586.409 kb on + strand, within SMc02224 at 586.409 kb on + strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.411 kb on + strand, within SMc02224 at 586.597 kb on - strand at 586.697 kb on - strand at 586.697 kb on - strand at 586.749 kb on - strand, within SMc02225 at 586.971 kb on + strand, within SMc02225 at 586.972 kb on - strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.974 kb on - strand, within SMc02225 at 587.227 kb on - strand at 587.482 kb on + strand, within SMc02226 at 587.483 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.564 kb on + strand, within SMc02226
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 584,554 - -0.1 584,554 - +4.1 584,616 + -1.1 584,617 - -0.6 584,874 + SMc02223 0.39 -0.6 584,874 + SMc02223 0.39 +0.4 584,875 - SMc02223 0.40 +0.1 584,875 - SMc02223 0.40 -0.7 584,875 - SMc02223 0.40 -3.4 584,875 - SMc02223 0.40 +0.1 585,095 + SMc02223 0.73 -1.4 585,096 - SMc02223 0.73 +1.2 585,096 - SMc02223 0.73 +0.2 585,338 - +0.7 585,383 - -3.1 585,412 + -0.9 585,412 + -0.6 585,464 + -0.4 585,464 + -1.8 585,800 - SMc02224 0.28 +0.1 585,806 + SMc02224 0.28 +0.7 585,806 + SMc02224 0.28 -1.5 585,806 + SMc02224 0.28 +0.6 585,807 - SMc02224 0.29 -0.1 585,807 - SMc02224 0.29 +1.6 585,887 + SMc02224 0.36 +3.4 585,887 + SMc02224 0.36 -0.9 585,887 + SMc02224 0.36 -2.9 585,887 + SMc02224 0.36 +0.1 585,889 + SMc02224 0.36 +1.6 585,912 - SMc02224 0.38 -2.1 585,986 + SMc02224 0.45 +2.7 585,987 - SMc02224 0.45 -0.2 586,025 + SMc02224 0.49 +5.4 586,025 + SMc02224 0.49 +1.5 586,025 + SMc02224 0.49 -0.3 586,026 - SMc02224 0.49 +0.5 586,027 + SMc02224 0.49 -0.2 586,027 + SMc02224 0.49 +3.0 586,027 + SMc02224 0.49 +1.5 586,027 + SMc02224 0.49 +1.6 586,028 - SMc02224 0.49 -1.8 586,064 + SMc02224 0.52 -1.8 586,076 + SMc02224 0.53 +0.5 586,409 + SMc02224 0.84 +1.0 586,409 + SMc02224 0.84 -0.9 586,410 - SMc02224 0.84 +0.5 586,410 - SMc02224 0.84 -0.3 586,410 - SMc02224 0.84 -0.5 586,411 + SMc02224 0.84 +0.1 586,597 - -0.1 586,697 - -1.1 586,697 - -2.1 586,749 - SMc02225 0.12 +0.7 586,971 + SMc02225 0.54 -0.2 586,972 - SMc02225 0.55 -0.8 586,973 + SMc02225 0.55 -1.2 586,973 + SMc02225 0.55 +1.1 586,974 - SMc02225 0.55 -1.3 587,227 - +1.2 587,482 + SMc02226 0.31 -0.1 587,483 - SMc02226 0.31 +1.5 587,547 - SMc02226 0.45 -3.2 587,547 - SMc02226 0.45 +0.7 587,564 + SMc02226 0.48 +0.2
Or see this region's nucleotide sequence