Strain Fitness in Sinorhizobium meliloti 1021 around SMc01351

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01352 and SMc01351 are separated by 103 nucleotidesSMc01351 and SMc01350 are separated by 286 nucleotides SMc01352: SMc01352 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 1,429,018 to 1,430,499 SMc01352 SMc01351: SMc01351 - hypothetical protein, at 1,430,603 to 1,430,857 SMc01351 SMc01350: SMc01350 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,431,144 to 1,432,694 SMc01350 Position (kb) 1430 1431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1430.567 kb on + strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.704 kb on + strand, within SMc01351at 1430.733 kb on + strand, within SMc01351at 1430.753 kb on - strand, within SMc01351at 1430.861 kb on + strandat 1430.877 kb on - strandat 1431.004 kb on + strandat 1431.004 kb on + strandat 1431.005 kb on - strandat 1431.005 kb on - strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,430,567 + -0.1
1,430,568 - +0.2
1,430,568 - +0.6
1,430,568 - -1.7
1,430,568 - +0.3
1,430,704 + SMc01351 0.40 -0.5
1,430,733 + SMc01351 0.51 +0.3
1,430,753 - SMc01351 0.59 +1.4
1,430,861 + +2.8
1,430,877 - -0.2
1,431,004 + -0.2
1,431,004 + +1.1
1,431,005 - -0.6
1,431,005 - -0.5
1,431,008 + +0.2
1,431,008 + -0.2
1,431,008 + +1.3
1,431,008 + +0.1
1,431,008 + +0.8
1,431,008 + -3.0
1,431,120 + -0.2

Or see this region's nucleotide sequence