Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01207 and SMc01206 are separated by 0 nucleotides SMc01206 and SMc01205 are separated by 448 nucleotides
SMc01207: SMc01207 - S-adenosylmethionine--tRNA ribosyltransferase-isomerase, at 1,721,115 to 1,722,197
SMc01207
SMc01206: SMc01206 - queuine tRNA-ribosyltransferase, at 1,722,198 to 1,723,328
SMc01206
SMc01205: SMc01205 - amino-acid-binding periplasmic signal peptide protein, at 1,723,777 to 1,724,532
SMc01205
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1721.350 kb on + strand, within SMc01207 at 1721.351 kb on - strand, within SMc01207 at 1721.351 kb on - strand, within SMc01207 at 1721.351 kb on - strand, within SMc01207 at 1721.351 kb on - strand, within SMc01207 at 1722.196 kb on - strand at 1722.381 kb on - strand, within SMc01206 at 1722.960 kb on - strand, within SMc01206 at 1723.216 kb on - strand at 1723.387 kb on + strand at 1723.387 kb on + strand at 1723.388 kb on - strand at 1723.388 kb on - strand at 1723.397 kb on - strand at 1723.397 kb on - strand at 1723.632 kb on + strand at 1723.689 kb on - strand at 1723.790 kb on + strand at 1723.791 kb on - strand at 1723.795 kb on - strand at 1723.995 kb on - strand, within SMc01205 at 1724.122 kb on + strand, within SMc01205 at 1724.125 kb on + strand, within SMc01205 at 1724.125 kb on + strand, within SMc01205 at 1724.126 kb on - strand, within SMc01205 at 1724.126 kb on - strand, within SMc01205 at 1724.134 kb on + strand, within SMc01205 at 1724.135 kb on - strand, within SMc01205 at 1724.140 kb on + strand, within SMc01205 at 1724.190 kb on + strand, within SMc01205 at 1724.190 kb on + strand, within SMc01205 at 1724.191 kb on - strand, within SMc01205 at 1724.281 kb on + strand, within SMc01205 at 1724.281 kb on + strand, within SMc01205 at 1724.282 kb on - strand, within SMc01205
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,721,350 + SMc01207 0.22 -0.3 1,721,351 - SMc01207 0.22 -3.2 1,721,351 - SMc01207 0.22 -0.6 1,721,351 - SMc01207 0.22 +2.0 1,721,351 - SMc01207 0.22 -1.3 1,722,196 - -0.6 1,722,381 - SMc01206 0.16 -2.6 1,722,960 - SMc01206 0.67 -3.8 1,723,216 - -0.3 1,723,387 + -0.9 1,723,387 + +0.2 1,723,388 - -0.4 1,723,388 - -2.0 1,723,397 - +0.6 1,723,397 - -0.4 1,723,632 + +0.1 1,723,689 - +0.2 1,723,790 + -2.2 1,723,791 - +0.6 1,723,795 - -0.0 1,723,995 - SMc01205 0.29 -3.4 1,724,122 + SMc01205 0.46 +0.8 1,724,125 + SMc01205 0.46 -1.0 1,724,125 + SMc01205 0.46 +0.4 1,724,126 - SMc01205 0.46 -0.7 1,724,126 - SMc01205 0.46 -0.3 1,724,134 + SMc01205 0.47 +0.9 1,724,135 - SMc01205 0.47 -2.0 1,724,140 + SMc01205 0.48 -0.5 1,724,190 + SMc01205 0.55 -2.4 1,724,190 + SMc01205 0.55 +1.6 1,724,191 - SMc01205 0.55 -0.3 1,724,281 + SMc01205 0.67 +0.5 1,724,281 + SMc01205 0.67 +0.2 1,724,282 - SMc01205 0.67 +1.0
Or see this region's nucleotide sequence