Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00883 and SMc00882 overlap by 4 nucleotides SMc00882 and SMc00881 are separated by 14 nucleotides SMc00881 and SMc00880 overlap by 4 nucleotides SMc00880 and SMc00879 are separated by 125 nucleotides
SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 903,810 to 904,694
SMc00883
SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329
SMc00882
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
SMc00880: SMc00880 - oxidoreductase, at 906,261 to 907,031
SMc00880
SMc00879: SMc00879 - transcriptional regulator, at 907,157 to 908,011
SMc00879
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 904.586 kb on + strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.707 kb on + strand at 904.720 kb on - strand at 904.824 kb on + strand, within SMc00882 at 904.824 kb on + strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand, within SMc00882 at 904.825 kb on - strand at 905.122 kb on + strand, within SMc00882 at 905.234 kb on - strand, within SMc00882 at 905.271 kb on - strand at 905.271 kb on - strand at 905.271 kb on - strand at 905.342 kb on + strand at 905.445 kb on + strand, within SMc00881 at 905.451 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.486 kb on - strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.656 kb on + strand, within SMc00881 at 905.657 kb on - strand, within SMc00881 at 905.694 kb on + strand, within SMc00881 at 905.695 kb on - strand, within SMc00881 at 906.018 kb on + strand, within SMc00881 at 906.020 kb on + strand, within SMc00881 at 906.245 kb on + strand at 906.249 kb on - strand at 906.476 kb on + strand, within SMc00880 at 906.477 kb on - strand, within SMc00880 at 906.564 kb on - strand, within SMc00880 at 906.957 kb on + strand at 907.122 kb on - strand at 907.122 kb on - strand at 907.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 904,586 + SMc00883 0.88 -0.9 904,586 + SMc00883 0.88 +0.3 904,587 - SMc00883 0.88 -1.2 904,587 - SMc00883 0.88 +2.6 904,587 - SMc00883 0.88 -1.2 904,587 - SMc00883 0.88 -0.4 904,707 + -0.0 904,720 - +0.6 904,824 + SMc00882 0.21 -0.2 904,824 + SMc00882 0.21 +1.4 904,825 - SMc00882 0.21 +0.4 904,825 - SMc00882 0.21 +0.4 904,825 - +3.3 905,122 + SMc00882 0.67 -1.1 905,234 - SMc00882 0.85 +2.3 905,271 - +0.6 905,271 - -1.9 905,271 - +1.0 905,342 + +0.5 905,445 + SMc00881 0.11 +0.4 905,451 - SMc00881 0.12 +0.4 905,486 - SMc00881 0.15 +1.7 905,486 - SMc00881 0.15 -0.5 905,486 - SMc00881 0.15 +1.4 905,486 - SMc00881 0.15 +1.8 905,656 + SMc00881 0.34 +0.7 905,656 + SMc00881 0.34 +0.3 905,657 - SMc00881 0.34 +0.3 905,694 + SMc00881 0.38 -0.5 905,695 - SMc00881 0.38 -1.4 906,018 + SMc00881 0.73 +0.2 906,020 + SMc00881 0.73 +0.4 906,245 + -1.9 906,249 - +1.1 906,476 + SMc00880 0.28 +0.9 906,477 - SMc00880 0.28 +1.8 906,564 - SMc00880 0.39 -2.8 906,957 + -3.1 907,122 - -0.9 907,122 - -1.8 907,134 + +1.0
Or see this region's nucleotide sequence