Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00401 and SMc00402 are separated by 48 nucleotides SMc00402 and SMc00403 are separated by 154 nucleotides
SMc00401: SMc00401 - hypothetical protein, at 351,059 to 352,609
SMc00401
SMc00402: SMc00402 - signal peptide protein, at 352,658 to 353,938
SMc00402
SMc00403: SMc00403 - NOL1/NOP2/SUN family signature protein, at 354,093 to 355,382
SMc00403
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.927 kb on + strand, within SMc00401 at 351.928 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.054 kb on - strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.225 kb on - strand, within SMc00401 at 352.659 kb on + strand at 352.659 kb on + strand at 352.681 kb on + strand at 352.834 kb on - strand, within SMc00402 at 352.834 kb on - strand at 352.834 kb on - strand, within SMc00402 at 352.964 kb on - strand, within SMc00402 at 352.988 kb on - strand, within SMc00402 at 352.989 kb on + strand, within SMc00402 at 352.989 kb on + strand, within SMc00402 at 352.990 kb on - strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.002 kb on - strand, within SMc00402 at 353.130 kb on + strand, within SMc00402 at 353.278 kb on - strand, within SMc00402 at 353.571 kb on + strand, within SMc00402 at 353.572 kb on - strand, within SMc00402 at 353.586 kb on + strand, within SMc00402 at 353.587 kb on - strand, within SMc00402 at 353.665 kb on - strand, within SMc00402 at 353.802 kb on + strand, within SMc00402 at 353.803 kb on - strand, within SMc00402 at 353.970 kb on + strand at 353.970 kb on + strand at 353.971 kb on - strand at 353.971 kb on - strand at 354.094 kb on + strand at 354.195 kb on - strand at 354.272 kb on - strand, within SMc00403 at 354.317 kb on - strand, within SMc00403 at 354.566 kb on + strand, within SMc00403 at 354.598 kb on + strand, within SMc00403 at 354.617 kb on + strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.618 kb on - strand, within SMc00403 at 354.670 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403 at 354.777 kb on + strand, within SMc00403
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 351,927 + SMc00401 0.56 +0.4 351,928 - SMc00401 0.56 -0.3 351,986 - SMc00401 0.60 +0.2 351,986 - SMc00401 0.60 -0.1 351,987 + SMc00401 0.60 -2.2 351,987 + SMc00401 0.60 +0.1 351,987 + SMc00401 0.60 +1.7 351,987 + SMc00401 0.60 -0.4 351,987 + SMc00401 0.60 +1.7 351,988 - SMc00401 0.60 -1.1 351,988 - SMc00401 0.60 -0.3 351,988 - SMc00401 0.60 -1.0 352,053 + SMc00401 0.64 -0.1 352,053 + SMc00401 0.64 +1.2 352,054 - SMc00401 0.64 -0.8 352,224 + SMc00401 0.75 -2.1 352,224 + SMc00401 0.75 +1.6 352,224 + SMc00401 0.75 -0.1 352,225 - SMc00401 0.75 -1.4 352,659 + +3.0 352,659 + -0.2 352,681 + +0.7 352,834 - SMc00402 0.14 +0.2 352,834 - +0.0 352,834 - SMc00402 0.14 +1.0 352,964 - SMc00402 0.24 +1.1 352,988 - SMc00402 0.26 +0.5 352,989 + SMc00402 0.26 -0.3 352,989 + SMc00402 0.26 -0.5 352,990 - SMc00402 0.26 +0.0 353,001 + SMc00402 0.27 +1.1 353,001 + SMc00402 0.27 +1.5 353,001 + SMc00402 0.27 +2.6 353,002 - SMc00402 0.27 +1.6 353,130 + SMc00402 0.37 +1.7 353,278 - SMc00402 0.48 +1.4 353,571 + SMc00402 0.71 -0.7 353,572 - SMc00402 0.71 -0.3 353,586 + SMc00402 0.72 +0.0 353,587 - SMc00402 0.73 -1.1 353,665 - SMc00402 0.79 -0.5 353,802 + SMc00402 0.89 -1.6 353,803 - SMc00402 0.89 -1.1 353,970 + -2.9 353,970 + -2.5 353,971 - +0.2 353,971 - -0.5 354,094 + +1.3 354,195 - -0.3 354,272 - SMc00403 0.14 +2.3 354,317 - SMc00403 0.17 -0.5 354,566 + SMc00403 0.37 -2.0 354,598 + SMc00403 0.39 +0.8 354,617 + SMc00403 0.41 -2.6 354,618 - SMc00403 0.41 -2.6 354,618 - SMc00403 0.41 -0.2 354,670 + SMc00403 0.45 +0.4 354,777 + SMc00403 0.53 +1.1 354,777 + SMc00403 0.53 +1.1
Or see this region's nucleotide sequence