Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1684 and SMa1686 overlap by 8 nucleotides SMa1686 and SMa1688 are separated by 81 nucleotides
SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853
SMa1684
SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487
SMa1686
SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985
SMa1688
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.918 kb on + strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.021 kb on - strand, within SMa1684 at 950.311 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.707 kb on + strand at 950.708 kb on - strand at 950.708 kb on - strand at 950.770 kb on + strand at 950.771 kb on - strand at 950.877 kb on + strand at 950.878 kb on - strand at 950.878 kb on - strand at 950.948 kb on + strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 951.245 kb on - strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.328 kb on + strand, within SMa1686 at 951.489 kb on + strand at 951.489 kb on + strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.543 kb on + strand at 951.621 kb on + strand, within SMa1688 at 951.622 kb on - strand, within SMa1688 at 951.742 kb on - strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 952.094 kb on + strand at 952.095 kb on - strand at 952.136 kb on - strand at 952.406 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 949,918 + SMa1684 0.50 +2.2 949,919 - SMa1684 0.50 +0.9 949,919 - SMa1684 0.50 +0.6 950,020 + SMa1684 0.56 -3.7 950,020 + SMa1684 0.56 +2.0 950,021 - SMa1684 0.56 +0.7 950,311 - SMa1684 0.71 -1.6 950,466 - SMa1684 0.79 +0.3 950,466 - SMa1684 0.79 +0.6 950,466 - SMa1684 0.79 +0.2 950,466 - SMa1684 0.79 +0.3 950,707 + -3.1 950,708 - +3.0 950,708 - -0.5 950,770 + -2.6 950,771 - +0.6 950,877 + -2.7 950,878 - -2.4 950,878 - +1.2 950,948 + SMa1686 0.16 +2.3 950,949 - SMa1686 0.16 -0.2 950,949 - SMa1686 0.16 +0.6 951,245 - SMa1686 0.62 +0.1 951,297 + SMa1686 0.70 -0.6 951,297 + SMa1686 0.70 -2.1 951,328 + SMa1686 0.75 +1.3 951,489 + +1.1 951,489 + +1.2 951,490 - -0.7 951,490 - -0.6 951,490 - -1.4 951,543 + +0.6 951,621 + SMa1688 0.12 -1.4 951,622 - SMa1688 0.13 +1.6 951,742 - SMa1688 0.41 -0.0 951,777 + SMa1688 0.50 -2.5 951,777 + SMa1688 0.50 -0.5 952,094 + +1.9 952,095 - -2.1 952,136 - +2.3 952,406 - +2.1 952,415 - -2.1 952,415 - +1.0 952,415 - -1.6 952,415 - +1.7 952,425 + +1.7
Or see this region's nucleotide sequence