Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1646 and SMa1647 overlap by 4 nucleotides SMa1647 and SMa1649 overlap by 11 nucleotides SMa1649 and SMa1650 overlap by 10 nucleotides SMa1650 and SMa1651 are separated by 13 nucleotides
SMa1646: SMa1646 - ABC transporter ATP-binding protein, at 917,367 to 918,389
SMa1646
SMa1647: SMa1647 - ABC transporter ATP-binding protein, at 918,386 to 919,381
SMa1647
SMa1649: SMa1649 - ABC transporter permease, at 919,371 to 920,282
SMa1649
SMa1650: SMa1650 - ABC transporter permease, at 920,273 to 921,208
SMa1650
SMa1651: SMa1651 - ABC transporter substrate-binding protein, at 921,222 to 922,799
SMa1651
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 918.549 kb on - strand, within SMa1647 at 918.549 kb on - strand, within SMa1647 at 918.611 kb on + strand, within SMa1647 at 918.687 kb on + strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.884 kb on + strand, within SMa1647 at 918.952 kb on + strand, within SMa1647 at 918.974 kb on + strand, within SMa1647 at 918.975 kb on - strand, within SMa1647 at 918.975 kb on - strand, within SMa1647 at 919.055 kb on + strand, within SMa1647 at 919.136 kb on + strand, within SMa1647 at 919.291 kb on - strand at 919.291 kb on - strand at 919.559 kb on - strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.676 kb on - strand, within SMa1649 at 919.676 kb on - strand, within SMa1649 at 919.762 kb on - strand, within SMa1649 at 919.762 kb on - strand, within SMa1649 at 919.764 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.844 kb on + strand, within SMa1649 at 919.997 kb on + strand, within SMa1649 at 919.997 kb on + strand, within SMa1649 at 919.998 kb on - strand, within SMa1649 at 919.998 kb on - strand, within SMa1649 at 920.003 kb on + strand, within SMa1649 at 920.004 kb on - strand, within SMa1649 at 920.004 kb on - strand, within SMa1649 at 920.054 kb on + strand, within SMa1649 at 920.262 kb on + strand at 920.263 kb on - strand at 920.419 kb on - strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.661 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.827 kb on - strand, within SMa1650 at 921.007 kb on - strand, within SMa1650 at 921.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 918,549 - SMa1647 0.16 +1.7 918,549 - SMa1647 0.16 +1.2 918,611 + SMa1647 0.23 -0.0 918,687 + SMa1647 0.30 -1.7 918,688 - SMa1647 0.30 -0.1 918,688 - SMa1647 0.30 -3.1 918,688 - SMa1647 0.30 -3.4 918,884 + SMa1647 0.50 +2.6 918,952 + SMa1647 0.57 +1.9 918,974 + SMa1647 0.59 +2.0 918,975 - SMa1647 0.59 -0.4 918,975 - SMa1647 0.59 +0.1 919,055 + SMa1647 0.67 +0.7 919,136 + SMa1647 0.75 +1.5 919,291 - -0.6 919,291 - -0.2 919,559 - SMa1649 0.21 +0.8 919,675 + SMa1649 0.33 -0.1 919,675 + SMa1649 0.33 -3.2 919,675 + SMa1649 0.33 +1.2 919,676 - SMa1649 0.33 -1.6 919,676 - SMa1649 0.33 -1.6 919,762 - SMa1649 0.43 -0.8 919,762 - SMa1649 0.43 +0.4 919,764 - SMa1649 0.43 -0.2 919,782 - SMa1649 0.45 +1.2 919,782 - SMa1649 0.45 -1.9 919,782 - SMa1649 0.45 +1.8 919,844 + SMa1649 0.52 -3.2 919,997 + SMa1649 0.69 +1.8 919,997 + SMa1649 0.69 -2.9 919,998 - SMa1649 0.69 +0.1 919,998 - SMa1649 0.69 -2.2 920,003 + SMa1649 0.69 -3.4 920,004 - SMa1649 0.69 +0.6 920,004 - SMa1649 0.69 +0.3 920,054 + SMa1649 0.75 +1.2 920,262 + +1.9 920,263 - -0.3 920,419 - SMa1650 0.16 +0.3 920,636 + SMa1650 0.39 -1.0 920,636 + SMa1650 0.39 +2.2 920,661 - SMa1650 0.41 +0.3 920,743 - SMa1650 0.50 -1.3 920,743 - SMa1650 0.50 -0.7 920,743 - SMa1650 0.50 -1.0 920,827 - SMa1650 0.59 +0.5 921,007 - SMa1650 0.78 +0.9 921,260 - +0.5
Or see this region's nucleotide sequence