Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1600 and SMa1602 are separated by 279 nucleotides SMa1602 and SMa1604 are separated by 83 nucleotides
SMa1600: SMa1600 - Potassium efflux protein, at 891,838 to 893,592
SMa1600
SMa1602: SMa1602 - LysR family transcriptional regulator, at 893,872 to 894,747
SMa1602
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
Position (kb) 893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 892.872 kb on - strand, within SMa1600 at 893.022 kb on - strand, within SMa1600 at 893.121 kb on + strand, within SMa1600 at 893.122 kb on - strand, within SMa1600 at 893.122 kb on - strand, within SMa1600 at 893.130 kb on + strand, within SMa1600 at 893.131 kb on - strand, within SMa1600 at 893.320 kb on - strand, within SMa1600 at 893.408 kb on + strand, within SMa1600 at 893.450 kb on - strand at 893.453 kb on + strand at 893.481 kb on - strand at 893.532 kb on + strand at 893.599 kb on - strand at 893.733 kb on - strand at 893.733 kb on - strand at 893.792 kb on - strand at 893.810 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 894.136 kb on + strand, within SMa1602 at 894.251 kb on + strand, within SMa1602 at 894.252 kb on - strand, within SMa1602 at 894.395 kb on + strand, within SMa1602 at 894.426 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.555 kb on - strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.581 kb on - strand, within SMa1602 at 894.825 kb on + strand at 894.825 kb on + strand at 894.826 kb on - strand at 894.879 kb on + strand at 894.880 kb on - strand at 894.942 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.060 kb on - strand, within SMa1604 at 895.128 kb on + strand, within SMa1604 at 895.154 kb on + strand, within SMa1604 at 895.378 kb on - strand, within SMa1604 at 895.578 kb on + strand, within SMa1604 at 895.585 kb on - strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.643 kb on + strand, within SMa1604
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 892,872 - SMa1600 0.59 -0.9 893,022 - SMa1600 0.67 -0.8 893,121 + SMa1600 0.73 +0.5 893,122 - SMa1600 0.73 +0.4 893,122 - SMa1600 0.73 +1.2 893,130 + SMa1600 0.74 +0.2 893,131 - SMa1600 0.74 -0.5 893,320 - SMa1600 0.84 -0.2 893,408 + SMa1600 0.89 -1.0 893,450 - +2.3 893,453 + -0.6 893,481 - +1.3 893,532 + -0.4 893,599 - -0.5 893,733 - -2.1 893,733 - +1.0 893,792 - +1.1 893,810 - +1.2 893,855 - -0.0 893,855 - -1.0 893,855 - -1.3 893,855 - +1.2 894,136 + SMa1602 0.30 -2.9 894,251 + SMa1602 0.43 -2.5 894,252 - SMa1602 0.43 +0.8 894,395 + SMa1602 0.60 +0.5 894,426 + SMa1602 0.63 +1.8 894,486 + SMa1602 0.70 -1.8 894,486 + SMa1602 0.70 +1.1 894,551 + SMa1602 0.78 +2.2 894,551 + SMa1602 0.78 -0.0 894,554 + SMa1602 0.78 +1.0 894,554 + SMa1602 0.78 +1.2 894,554 + SMa1602 0.78 +0.7 894,555 - SMa1602 0.78 +1.8 894,580 + SMa1602 0.81 -1.1 894,580 + SMa1602 0.81 +0.4 894,581 - SMa1602 0.81 -1.7 894,825 + -0.3 894,825 + -1.2 894,826 - -0.4 894,879 + +0.3 894,880 - -3.2 894,942 - SMa1604 0.10 +0.7 894,970 - SMa1604 0.13 +0.5 894,970 - SMa1604 0.13 -0.8 895,038 + SMa1604 0.19 +0.1 895,038 + SMa1604 0.19 -0.8 895,038 + SMa1604 0.19 -3.3 895,060 - SMa1604 0.21 -1.0 895,128 + SMa1604 0.27 -0.0 895,154 + SMa1604 0.30 -1.0 895,378 - SMa1604 0.50 -0.2 895,578 + SMa1604 0.68 -3.0 895,585 - SMa1604 0.69 -0.3 895,620 + SMa1604 0.72 +0.1 895,620 + SMa1604 0.72 -0.0 895,620 + SMa1604 0.72 +0.6 895,621 - SMa1604 0.72 -3.2 895,621 - SMa1604 0.72 -1.9 895,621 - SMa1604 0.72 +0.2 895,643 + SMa1604 0.74 -0.4
Or see this region's nucleotide sequence