Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1562 and SMa1564 are separated by 9 nucleotides SMa1564 and SMa1568 are separated by 28 nucleotides
SMa1562: SMa1562 - Pilus assembly protein, at 865,351 to 866,316
SMa1562
SMa1564: SMa1564 - Pilus assembly protein, at 866,326 to 867,327
SMa1564
SMa1568: SMa1568 - CpaF2 pilus assembly protein, at 867,356 to 868,849
SMa1568
Position (kb) 866
867
868 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 865.352 kb on + strand at 865.353 kb on - strand at 865.637 kb on + strand, within SMa1562 at 865.638 kb on - strand, within SMa1562 at 865.752 kb on + strand, within SMa1562 at 865.848 kb on - strand, within SMa1562 at 865.926 kb on - strand, within SMa1562 at 866.004 kb on + strand, within SMa1562 at 866.005 kb on - strand, within SMa1562 at 866.116 kb on + strand, within SMa1562 at 866.117 kb on - strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.438 kb on + strand, within SMa1564 at 866.438 kb on + strand, within SMa1564 at 866.438 kb on + strand, within SMa1564 at 866.892 kb on - strand, within SMa1564 at 866.892 kb on - strand, within SMa1564 at 866.963 kb on - strand, within SMa1564 at 866.963 kb on - strand, within SMa1564 at 866.991 kb on + strand, within SMa1564 at 867.245 kb on + strand at 867.245 kb on + strand at 867.246 kb on - strand at 867.417 kb on + strand at 867.452 kb on + strand at 867.513 kb on + strand, within SMa1568 at 867.514 kb on - strand, within SMa1568 at 867.986 kb on - strand, within SMa1568 at 867.987 kb on + strand, within SMa1568 at 867.988 kb on - strand, within SMa1568 at 868.149 kb on + strand, within SMa1568 at 868.294 kb on + strand, within SMa1568 at 868.295 kb on - strand, within SMa1568 at 868.295 kb on - strand, within SMa1568 at 868.301 kb on + strand, within SMa1568
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 865,352 + -0.9 865,353 - +0.9 865,637 + SMa1562 0.30 +0.4 865,638 - SMa1562 0.30 -1.9 865,752 + SMa1562 0.42 +0.5 865,848 - SMa1562 0.51 +0.4 865,926 - SMa1562 0.60 -0.8 866,004 + SMa1562 0.68 -0.0 866,005 - SMa1562 0.68 +0.4 866,116 + SMa1562 0.79 -0.2 866,117 - SMa1562 0.79 -0.5 866,219 + SMa1562 0.90 -1.1 866,219 + SMa1562 0.90 -1.0 866,220 - -0.2 866,220 - +0.1 866,220 - -1.5 866,220 - -1.7 866,269 + -2.8 866,269 + -0.2 866,269 + +1.5 866,269 + +0.6 866,269 + +0.2 866,269 + +0.6 866,438 + SMa1564 0.11 -2.8 866,438 + SMa1564 0.11 -1.1 866,438 + SMa1564 0.11 -2.4 866,892 - SMa1564 0.56 -0.7 866,892 - SMa1564 0.56 +0.2 866,963 - SMa1564 0.64 -2.0 866,963 - SMa1564 0.64 -2.4 866,991 + SMa1564 0.66 -1.9 867,245 + -0.7 867,245 + -4.0 867,246 - -0.3 867,417 + +0.5 867,452 + +2.5 867,513 + SMa1568 0.11 +1.7 867,514 - SMa1568 0.11 +0.2 867,986 - SMa1568 0.42 -0.0 867,987 + SMa1568 0.42 +0.8 867,988 - SMa1568 0.42 -1.2 868,149 + SMa1568 0.53 +0.1 868,294 + SMa1568 0.63 -2.3 868,295 - SMa1568 0.63 -2.5 868,295 - SMa1568 0.63 +0.3 868,301 + SMa1568 0.63 +0.2
Or see this region's nucleotide sequence