Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1529 and SMa1531 are separated by 16 nucleotides SMa1531 and SMa1532 overlap by 4 nucleotides SMa1532 and SMa1533 overlap by 13 nucleotides
SMa1529: SMa1529 - NuoD2 NADH I chain D, at 843,074 to 844,288
SMa1529
SMa1531: SMa1531 - NuoC2 NADH I chain C, at 844,305 to 844,853
SMa1531
SMa1532: SMa1532 - NADH dehydrogenase subunit B, at 844,850 to 845,353
SMa1532
SMa1533: SMa1533 - NuoA2 NADH I chain A, at 845,341 to 845,706
SMa1533
Position (kb) 844
845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 843.391 kb on + strand, within SMa1529 at 843.538 kb on - strand, within SMa1529 at 843.538 kb on - strand, within SMa1529 at 843.655 kb on + strand, within SMa1529 at 843.684 kb on - strand, within SMa1529 at 843.696 kb on + strand, within SMa1529 at 843.719 kb on + strand, within SMa1529 at 843.793 kb on - strand, within SMa1529 at 843.865 kb on - strand, within SMa1529 at 843.895 kb on + strand, within SMa1529 at 843.961 kb on + strand, within SMa1529 at 843.963 kb on + strand, within SMa1529 at 843.964 kb on - strand, within SMa1529 at 843.987 kb on - strand, within SMa1529 at 844.047 kb on + strand, within SMa1529 at 844.125 kb on + strand, within SMa1529 at 844.133 kb on - strand, within SMa1529 at 844.156 kb on - strand, within SMa1529 at 844.156 kb on - strand, within SMa1529 at 844.323 kb on + strand at 844.324 kb on - strand at 844.325 kb on + strand at 844.326 kb on - strand at 844.378 kb on - strand, within SMa1531 at 844.397 kb on - strand, within SMa1531 at 844.453 kb on + strand, within SMa1531 at 844.453 kb on + strand, within SMa1531 at 844.453 kb on + strand, within SMa1531 at 844.495 kb on + strand, within SMa1531 at 844.495 kb on + strand, within SMa1531 at 844.495 kb on + strand, within SMa1531 at 844.495 kb on + strand, within SMa1531 at 844.496 kb on - strand, within SMa1531 at 844.496 kb on - strand, within SMa1531 at 844.500 kb on - strand, within SMa1531 at 844.500 kb on - strand, within SMa1531 at 844.618 kb on + strand, within SMa1531 at 844.618 kb on + strand, within SMa1531 at 844.618 kb on + strand, within SMa1531 at 844.627 kb on + strand, within SMa1531 at 844.627 kb on + strand, within SMa1531 at 844.628 kb on - strand, within SMa1531 at 844.674 kb on + strand, within SMa1531 at 844.674 kb on + strand, within SMa1531 at 844.675 kb on - strand, within SMa1531 at 844.675 kb on - strand, within SMa1531 at 844.765 kb on + strand, within SMa1531 at 844.765 kb on + strand, within SMa1531 at 844.765 kb on + strand, within SMa1531 at 844.766 kb on - strand, within SMa1531 at 844.766 kb on - strand, within SMa1531 at 844.859 kb on + strand at 844.859 kb on + strand at 844.859 kb on + strand at 844.859 kb on + strand at 844.859 kb on + strand at 844.859 kb on + strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.860 kb on - strand at 844.861 kb on + strand at 845.016 kb on + strand, within SMa1532 at 845.016 kb on + strand, within SMa1532 at 845.016 kb on + strand, within SMa1532 at 845.017 kb on - strand, within SMa1532 at 845.017 kb on - strand, within SMa1532 at 845.017 kb on - strand, within SMa1532 at 845.025 kb on + strand, within SMa1532 at 845.025 kb on + strand, within SMa1532 at 845.026 kb on - strand, within SMa1532 at 845.202 kb on + strand, within SMa1532 at 845.318 kb on + strand at 845.318 kb on + strand at 845.318 kb on + strand at 845.319 kb on - strand at 845.379 kb on - strand, within SMa1533 at 845.396 kb on - strand, within SMa1533 at 845.396 kb on - strand, within SMa1533 at 845.509 kb on - strand, within SMa1533 at 845.517 kb on + strand, within SMa1533 at 845.568 kb on + strand, within SMa1533 at 845.580 kb on - strand, within SMa1533 at 845.672 kb on + strand at 845.674 kb on - strand at 845.706 kb on + strand at 845.822 kb on + strand at 845.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 843,391 + SMa1529 0.26 +1.4 843,538 - SMa1529 0.38 +0.4 843,538 - SMa1529 0.38 -1.4 843,655 + SMa1529 0.48 -0.8 843,684 - SMa1529 0.50 -0.7 843,696 + SMa1529 0.51 -4.0 843,719 + SMa1529 0.53 +0.7 843,793 - SMa1529 0.59 -0.5 843,865 - SMa1529 0.65 +1.2 843,895 + SMa1529 0.68 -1.9 843,961 + SMa1529 0.73 -0.2 843,963 + SMa1529 0.73 +0.8 843,964 - SMa1529 0.73 +3.2 843,987 - SMa1529 0.75 +1.5 844,047 + SMa1529 0.80 -0.5 844,125 + SMa1529 0.87 +1.5 844,133 - SMa1529 0.87 -1.6 844,156 - SMa1529 0.89 -0.1 844,156 - SMa1529 0.89 +1.4 844,323 + +1.2 844,324 - +0.1 844,325 + -0.1 844,326 - -1.6 844,378 - SMa1531 0.13 +0.2 844,397 - SMa1531 0.17 -1.6 844,453 + SMa1531 0.27 -0.9 844,453 + SMa1531 0.27 -2.7 844,453 + SMa1531 0.27 +1.3 844,495 + SMa1531 0.35 -1.3 844,495 + SMa1531 0.35 -1.2 844,495 + SMa1531 0.35 -0.2 844,495 + SMa1531 0.35 -0.2 844,496 - SMa1531 0.35 +2.1 844,496 - SMa1531 0.35 -0.5 844,500 - SMa1531 0.36 +0.5 844,500 - SMa1531 0.36 -3.8 844,618 + SMa1531 0.57 +1.7 844,618 + SMa1531 0.57 -0.7 844,618 + SMa1531 0.57 +0.0 844,627 + SMa1531 0.59 +0.2 844,627 + SMa1531 0.59 -0.7 844,628 - SMa1531 0.59 -1.2 844,674 + SMa1531 0.67 -2.2 844,674 + SMa1531 0.67 -0.3 844,675 - SMa1531 0.67 -3.0 844,675 - SMa1531 0.67 -1.2 844,765 + SMa1531 0.84 -0.9 844,765 + SMa1531 0.84 +0.1 844,765 + SMa1531 0.84 -1.5 844,766 - SMa1531 0.84 +2.1 844,766 - SMa1531 0.84 +2.1 844,859 + +0.3 844,859 + -0.5 844,859 + -0.5 844,859 + +1.0 844,859 + -0.0 844,859 + +2.1 844,860 - +1.3 844,860 - +0.7 844,860 - -0.7 844,860 - -1.8 844,860 - -1.0 844,860 - +0.4 844,860 - -1.9 844,860 - +2.5 844,860 - -2.5 844,861 + +0.3 845,016 + SMa1532 0.33 +0.8 845,016 + SMa1532 0.33 +1.4 845,016 + SMa1532 0.33 +1.0 845,017 - SMa1532 0.33 -3.3 845,017 - SMa1532 0.33 +1.5 845,017 - SMa1532 0.33 -0.3 845,025 + SMa1532 0.35 -0.2 845,025 + SMa1532 0.35 -0.4 845,026 - SMa1532 0.35 -3.5 845,202 + SMa1532 0.70 +0.3 845,318 + -0.3 845,318 + -2.8 845,318 + +0.5 845,319 - -3.5 845,379 - SMa1533 0.10 -2.0 845,396 - SMa1533 0.15 +0.7 845,396 - SMa1533 0.15 +0.3 845,509 - SMa1533 0.46 -0.7 845,517 + SMa1533 0.48 +0.1 845,568 + SMa1533 0.62 +0.1 845,580 - SMa1533 0.65 +0.6 845,672 + +1.6 845,674 - +0.0 845,706 + +1.2 845,822 + +0.4 845,823 - -0.4
Or see this region's nucleotide sequence