Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1442 and SMa1445 are separated by 251 nucleotides SMa1445 and SMa1447 are separated by 170 nucleotides
SMa1442: SMa1442 - GntR family transcriptional regulator, at 795,334 to 796,098
SMa1442
SMa1445: SMa1445 - hypothetical protein, at 796,350 to 797,222
SMa1445
SMa1447: SMa1447 - Permease, MFS, at 797,393 to 798,706
SMa1447
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 795.616 kb on + strand, within SMa1442 at 795.619 kb on - strand, within SMa1442 at 795.856 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 796.025 kb on - strand at 796.026 kb on + strand at 796.027 kb on - strand at 796.077 kb on + strand at 796.091 kb on - strand at 796.236 kb on + strand at 796.396 kb on + strand at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.658 kb on - strand, within SMa1445 at 796.689 kb on + strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.935 kb on + strand, within SMa1445 at 797.134 kb on + strand, within SMa1445 at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.146 kb on - strand at 797.146 kb on - strand at 797.147 kb on + strand at 797.148 kb on - strand at 797.209 kb on + strand at 797.551 kb on + strand, within SMa1447 at 797.596 kb on - strand, within SMa1447 at 797.610 kb on + strand, within SMa1447 at 797.616 kb on + strand, within SMa1447 at 797.738 kb on + strand, within SMa1447 at 797.775 kb on + strand, within SMa1447 at 797.775 kb on + strand, within SMa1447 at 797.899 kb on - strand, within SMa1447 at 798.097 kb on - strand, within SMa1447 at 798.171 kb on + strand, within SMa1447
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 795,616 + SMa1442 0.37 +1.1 795,619 - SMa1442 0.37 -0.0 795,856 + SMa1442 0.68 +0.8 795,998 + SMa1442 0.87 -0.0 795,998 + SMa1442 0.87 +0.7 795,999 - SMa1442 0.87 -0.5 795,999 - SMa1442 0.87 -2.8 796,025 - -1.5 796,026 + -0.5 796,027 - -2.0 796,077 + +0.0 796,091 - -2.0 796,236 + -1.2 796,396 + +0.1 796,489 + SMa1445 0.16 +0.9 796,489 + SMa1445 0.16 -1.8 796,489 + SMa1445 0.16 -0.1 796,490 - SMa1445 0.16 +1.1 796,490 - SMa1445 0.16 -1.8 796,490 - SMa1445 0.16 -1.6 796,490 - SMa1445 0.16 -2.6 796,658 - SMa1445 0.35 -0.8 796,689 + SMa1445 0.39 -0.4 796,835 - SMa1445 0.56 -1.4 796,835 - SMa1445 0.56 -0.7 796,935 + SMa1445 0.67 -3.3 797,134 + SMa1445 0.90 +0.3 797,145 + -0.7 797,145 + -1.9 797,145 + -1.7 797,145 + -0.8 797,145 + -0.6 797,145 + +0.1 797,145 + -0.2 797,145 + -1.8 797,146 - -0.8 797,146 - -1.2 797,147 + -1.4 797,148 - +0.9 797,209 + +0.1 797,551 + SMa1447 0.12 -1.5 797,596 - SMa1447 0.15 -1.9 797,610 + SMa1447 0.17 +1.4 797,616 + SMa1447 0.17 +4.4 797,738 + SMa1447 0.26 -0.6 797,775 + SMa1447 0.29 -1.7 797,775 + SMa1447 0.29 -2.9 797,899 - SMa1447 0.39 -1.8 798,097 - SMa1447 0.54 -0.6 798,171 + SMa1447 0.59 -1.2
Or see this region's nucleotide sequence