Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1397 and SMa1398 are separated by 8 nucleotides SMa1398 and SMa1400 overlap by 4 nucleotides SMa1400 and SMa1403 are separated by 159 nucleotides
SMa1397: SMa1397 - hypothetical protein, at 767,799 to 768,947
SMa1397
SMa1398: SMa1398 - 3-ketoacyl-ACP reductase, at 768,956 to 769,735
SMa1398
SMa1400: SMa1400 - acyl-CoA dehydrogenase, at 769,732 to 770,874
SMa1400
SMa1403: SMa1403 - oxidoreductase, at 771,034 to 772,050
SMa1403
Position (kb) 769
770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 768.905 kb on - strand at 768.905 kb on - strand at 769.113 kb on + strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.829 kb on + strand at 770.485 kb on + strand, within SMa1400 at 770.520 kb on - strand, within SMa1400 at 770.676 kb on - strand, within SMa1400 at 770.676 kb on - strand, within SMa1400 at 771.208 kb on + strand, within SMa1403 at 771.208 kb on + strand, within SMa1403 at 771.209 kb on - strand, within SMa1403 at 771.271 kb on + strand, within SMa1403 at 771.272 kb on - strand, within SMa1403 at 771.272 kb on - strand, within SMa1403 at 771.376 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.382 kb on + strand, within SMa1403 at 771.501 kb on - strand, within SMa1403 at 771.656 kb on - strand, within SMa1403 at 771.657 kb on + strand, within SMa1403 at 771.657 kb on + strand, within SMa1403 at 771.658 kb on - strand at 771.658 kb on - strand, within SMa1403 at 771.790 kb on + strand, within SMa1403 at 771.790 kb on + strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.791 kb on - strand, within SMa1403 at 771.813 kb on - strand, within SMa1403 at 771.813 kb on - strand, within SMa1403
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 768,905 - -0.9 768,905 - -1.1 769,113 + SMa1398 0.20 +0.6 769,249 - SMa1398 0.38 -0.6 769,249 - SMa1398 0.38 -1.2 769,829 + +0.3 770,485 + SMa1400 0.66 +1.5 770,520 - SMa1400 0.69 -1.2 770,676 - SMa1400 0.83 +1.1 770,676 - SMa1400 0.83 +0.5 771,208 + SMa1403 0.17 -4.3 771,208 + SMa1403 0.17 -2.8 771,209 - SMa1403 0.17 -2.2 771,271 + SMa1403 0.23 -0.7 771,272 - SMa1403 0.23 -2.6 771,272 - SMa1403 0.23 +0.3 771,376 + SMa1403 0.34 +0.2 771,382 + SMa1403 0.34 +2.0 771,382 + SMa1403 0.34 -1.1 771,382 + SMa1403 0.34 +1.2 771,382 + SMa1403 0.34 +0.8 771,501 - SMa1403 0.46 -0.0 771,656 - SMa1403 0.61 -1.0 771,657 + SMa1403 0.61 +2.1 771,657 + SMa1403 0.61 +1.1 771,658 - +1.1 771,658 - SMa1403 0.61 +1.1 771,790 + SMa1403 0.74 -2.3 771,790 + SMa1403 0.74 -0.2 771,791 - SMa1403 0.74 +1.7 771,791 - SMa1403 0.74 -1.5 771,791 - SMa1403 0.74 +0.9 771,813 - SMa1403 0.77 -1.4 771,813 - SMa1403 0.77 +0.3
Or see this region's nucleotide sequence