Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1016 and SMa1017 are separated by 142 nucleotides SMa1017 and SMa1018 overlap by 4 nucleotides SMa1018 and SMa1021 are separated by 180 nucleotides SMa1021 and SMa1024 are separated by 494 nucleotides
SMa1016: SMa1016 - acyltransferase, at 563,673 to 564,947
SMa1016
SMa1017: SMa1017 - hypothetical protein, at 565,090 to 565,296
SMa1017
SMa1018: SMa1018 - hypothetical protein, at 565,293 to 565,655
SMa1018
SMa1021: SMa1021 - hypothetical protein, at 565,836 to 566,402
SMa1021
SMa1024: SMa1024 - hypothetical protein, at 566,897 to 567,319
SMa1024
Position (kb) 565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 564.877 kb on + strand at 564.886 kb on + strand at 564.887 kb on - strand at 564.887 kb on - strand at 564.951 kb on + strand at 564.955 kb on + strand at 564.973 kb on + strand at 564.974 kb on - strand at 565.067 kb on - strand at 565.094 kb on + strand at 565.094 kb on + strand at 565.095 kb on - strand at 565.095 kb on - strand at 565.135 kb on + strand, within SMa1017 at 565.136 kb on - strand, within SMa1017 at 565.339 kb on + strand, within SMa1018 at 565.339 kb on + strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.554 kb on + strand, within SMa1018 at 565.752 kb on + strand at 565.752 kb on + strand at 565.776 kb on + strand at 565.818 kb on + strand at 565.874 kb on + strand at 565.875 kb on - strand at 566.051 kb on - strand, within SMa1021 at 566.051 kb on - strand, within SMa1021 at 566.100 kb on + strand, within SMa1021 at 566.101 kb on - strand, within SMa1021 at 566.289 kb on - strand, within SMa1021 at 566.382 kb on + strand at 566.382 kb on + strand at 566.382 kb on + strand at 566.485 kb on + strand at 566.486 kb on - strand at 566.506 kb on + strand at 566.507 kb on - strand at 566.512 kb on + strand at 566.513 kb on - strand at 566.533 kb on + strand at 566.533 kb on + strand at 566.692 kb on - strand at 566.696 kb on + strand at 566.696 kb on + strand at 566.701 kb on - strand at 566.819 kb on - strand at 566.826 kb on + strand at 566.827 kb on - strand at 566.827 kb on - strand at 567.361 kb on + strand at 567.361 kb on + strand at 567.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 564,877 + +0.5 564,886 + -0.9 564,887 - -3.5 564,887 - -2.0 564,951 + +0.7 564,955 + -1.6 564,973 + -1.4 564,974 - -0.5 565,067 - +0.5 565,094 + +3.4 565,094 + -3.0 565,095 - +0.6 565,095 - +1.9 565,135 + SMa1017 0.22 +1.3 565,136 - SMa1017 0.22 -1.2 565,339 + SMa1018 0.13 +1.0 565,339 + SMa1018 0.13 -0.7 565,340 - SMa1018 0.13 +3.2 565,340 - SMa1018 0.13 +0.9 565,340 - SMa1018 0.13 -0.7 565,340 - SMa1018 0.13 +0.8 565,340 - SMa1018 0.13 -0.0 565,554 + SMa1018 0.72 +0.8 565,752 + +0.2 565,752 + -2.2 565,776 + +0.6 565,818 + +1.6 565,874 + +2.0 565,875 - -3.7 566,051 - SMa1021 0.38 -0.5 566,051 - SMa1021 0.38 +0.5 566,100 + SMa1021 0.47 -0.6 566,101 - SMa1021 0.47 +2.0 566,289 - SMa1021 0.80 +2.6 566,382 + +1.5 566,382 + -2.8 566,382 + +2.1 566,485 + -0.6 566,486 - +1.1 566,506 + -0.2 566,507 - -3.1 566,512 + +0.1 566,513 - -0.4 566,533 + -1.1 566,533 + +1.5 566,692 - -0.6 566,696 + -0.5 566,696 + +0.5 566,701 - +0.2 566,819 - -0.6 566,826 + +0.1 566,827 - -1.6 566,827 - +0.9 567,361 + +0.5 567,361 + +0.7 567,361 + +0.7
Or see this region's nucleotide sequence