Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0950 and SMa0951 are separated by 30 nucleotides SMa0951 and SMa0952 overlap by 11 nucleotides SMa0952 and SMa0953 overlap by 4 nucleotides
SMa0950: SMa0950 - ABC transporter substrate-binding protein, at 529,782 to 530,855
SMa0950
SMa0951: SMa0951 - ABC transporter permease, at 530,886 to 531,749
SMa0951
SMa0952: SMa0952 - ABC transporter permease, at 531,739 to 532,629
SMa0952
SMa0953: SMa0953 - ABC transporter ATP-binding protein, at 532,626 to 533,744
SMa0953
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 530.752 kb on - strand at 530.887 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.927 kb on + strand at 530.982 kb on + strand, within SMa0951 at 531.046 kb on - strand, within SMa0951 at 531.079 kb on - strand, within SMa0951 at 531.155 kb on + strand, within SMa0951 at 531.236 kb on - strand, within SMa0951 at 531.236 kb on - strand, within SMa0951 at 531.277 kb on + strand, within SMa0951 at 531.309 kb on + strand, within SMa0951 at 531.309 kb on + strand, within SMa0951 at 531.310 kb on - strand, within SMa0951 at 531.313 kb on + strand, within SMa0951 at 531.342 kb on + strand, within SMa0951 at 531.372 kb on + strand, within SMa0951 at 531.373 kb on - strand, within SMa0951 at 531.402 kb on + strand, within SMa0951 at 531.518 kb on + strand, within SMa0951 at 531.518 kb on + strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.585 kb on + strand, within SMa0951 at 531.698 kb on + strand at 531.743 kb on + strand at 531.744 kb on - strand at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.933 kb on - strand, within SMa0952 at 532.058 kb on + strand, within SMa0952 at 532.090 kb on + strand, within SMa0952 at 532.154 kb on + strand, within SMa0952 at 532.155 kb on - strand, within SMa0952 at 532.244 kb on + strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.750 kb on - strand, within SMa0953 at 532.750 kb on - strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.949 kb on + strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.994 kb on + strand, within SMa0953 at 533.170 kb on + strand, within SMa0953 at 533.171 kb on - strand, within SMa0953 at 533.348 kb on - strand, within SMa0953
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 530,752 - +1.4 530,887 + +0.7 530,900 + +0.0 530,900 + -2.6 530,927 + -0.9 530,982 + SMa0951 0.11 -1.3 531,046 - SMa0951 0.19 -0.1 531,079 - SMa0951 0.22 +1.2 531,155 + SMa0951 0.31 +2.1 531,236 - SMa0951 0.41 +1.5 531,236 - SMa0951 0.41 +0.4 531,277 + SMa0951 0.45 -2.9 531,309 + SMa0951 0.49 +1.1 531,309 + SMa0951 0.49 -1.2 531,310 - SMa0951 0.49 -1.3 531,313 + SMa0951 0.49 -1.3 531,342 + SMa0951 0.53 +1.1 531,372 + SMa0951 0.56 +0.6 531,373 - SMa0951 0.56 +0.6 531,402 + SMa0951 0.60 -0.9 531,518 + SMa0951 0.73 +0.1 531,518 + SMa0951 0.73 +0.6 531,519 - SMa0951 0.73 +0.2 531,519 - SMa0951 0.73 -1.9 531,519 - SMa0951 0.73 -1.0 531,519 - SMa0951 0.73 +0.9 531,521 - SMa0951 0.73 -1.8 531,521 - SMa0951 0.73 +0.8 531,521 - SMa0951 0.73 +0.0 531,585 + SMa0951 0.81 +1.0 531,698 + +1.4 531,743 + +0.9 531,744 - -0.2 531,932 + SMa0952 0.22 -0.1 531,932 + SMa0952 0.22 -1.9 531,932 + SMa0952 0.22 +0.4 531,932 + SMa0952 0.22 +0.1 531,933 - SMa0952 0.22 -2.8 532,058 + SMa0952 0.36 -0.1 532,090 + SMa0952 0.39 -0.5 532,154 + SMa0952 0.47 -0.9 532,155 - SMa0952 0.47 -0.7 532,244 + SMa0952 0.57 +0.1 532,355 - SMa0952 0.69 -4.4 532,355 - SMa0952 0.69 -1.1 532,750 - SMa0953 0.11 +0.7 532,750 - SMa0953 0.11 -2.6 532,786 + SMa0953 0.14 -0.4 532,786 + SMa0953 0.14 +0.2 532,786 + SMa0953 0.14 +0.9 532,787 - SMa0953 0.14 +3.8 532,787 - SMa0953 0.14 -2.0 532,912 + SMa0953 0.26 -1.8 532,912 + SMa0953 0.26 -1.0 532,913 - SMa0953 0.26 +0.2 532,913 - SMa0953 0.26 +2.4 532,949 + SMa0953 0.29 +0.7 532,950 - SMa0953 0.29 -1.2 532,950 - SMa0953 0.29 +0.3 532,950 - SMa0953 0.29 +1.1 532,994 + SMa0953 0.33 -2.1 533,170 + SMa0953 0.49 -0.5 533,171 - SMa0953 0.49 -1.3 533,348 - SMa0953 0.65 +2.1
Or see this region's nucleotide sequence