Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0512 and SMa0513 are separated by 69 nucleotides SMa0513 and SMa0514 are separated by 1 nucleotides SMa0514 and SMa0516 overlap by 4 nucleotides
SMa0512: SMa0512 - IdnD L-idonate 5-dehydrogenase, at 276,745 to 277,776
SMa0512
SMa0513: SMa0513 - gluconate 5-dehydrogenase, at 277,846 to 278,601
SMa0513
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.871 kb on + strand, within SMa0512 at 276.871 kb on + strand, within SMa0512 at 276.872 kb on - strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 277.033 kb on + strand, within SMa0512 at 277.034 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512 at 277.774 kb on + strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.845 kb on + strand at 277.845 kb on + strand at 277.846 kb on - strand at 277.846 kb on - strand at 277.846 kb on - strand at 278.308 kb on + strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.569 kb on + strand at 278.570 kb on - strand at 278.570 kb on - strand at 278.705 kb on + strand, within SMa0514 at 278.705 kb on + strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 279.298 kb on + strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.305 kb on + strand, within SMa0516 at 279.306 kb on - strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.600 kb on + strand, within SMa0516
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 276,871 + SMa0512 0.12 +0.1 276,871 + SMa0512 0.12 -0.6 276,872 - SMa0512 0.12 -3.3 276,874 + SMa0512 0.12 +0.0 276,874 + SMa0512 0.12 +0.7 276,875 - SMa0512 0.13 -1.0 276,875 - SMa0512 0.13 -0.6 276,875 - SMa0512 0.13 -3.1 276,875 - SMa0512 0.13 +0.4 277,033 + SMa0512 0.28 +0.4 277,034 - SMa0512 0.28 +1.2 277,463 - SMa0512 0.70 -1.8 277,463 - SMa0512 0.70 +0.7 277,774 + -2.6 277,779 - -1.0 277,779 - -2.8 277,779 - +0.1 277,845 + -0.2 277,845 + +0.7 277,846 - -3.4 277,846 - +1.3 277,846 - +0.4 278,308 + SMa0513 0.61 -0.9 278,309 - SMa0513 0.61 -2.0 278,309 - SMa0513 0.61 -1.0 278,569 + +0.1 278,570 - +0.1 278,570 - +0.6 278,705 + SMa0514 0.20 +2.6 278,705 + SMa0514 0.20 +0.7 278,706 - SMa0514 0.20 -3.2 278,706 - SMa0514 0.20 +0.3 279,298 + SMa0516 0.20 +1.1 279,299 - SMa0516 0.20 +1.1 279,299 - SMa0516 0.20 +1.2 279,299 - SMa0516 0.20 +1.1 279,305 + SMa0516 0.21 -1.2 279,306 - SMa0516 0.21 -0.7 279,592 + SMa0516 0.53 -1.5 279,592 + SMa0516 0.53 +1.0 279,600 + SMa0516 0.54 -1.0
Or see this region's nucleotide sequence