Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0367 and SMa0369 are separated by 97 nucleotides SMa0369 and SMa0372 are separated by 932 nucleotides
SMa0367: SMa0367 - hypothetical protein, at 196,912 to 197,808
SMa0367
SMa0369: SMa0369 - hypothetical protein, at 197,906 to 198,172
SMa0369
SMa0372: SMa0372 - LysR family transcriptional regulator, at 199,105 to 200,004
SMa0372
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.927 kb on + strand at 197.065 kb on - strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.200 kb on - strand, within SMa0367 at 197.315 kb on + strand, within SMa0367 at 197.492 kb on + strand, within SMa0367 at 197.537 kb on + strand, within SMa0367 at 197.718 kb on - strand, within SMa0367 at 197.723 kb on - strand at 197.909 kb on + strand at 198.090 kb on + strand, within SMa0369 at 198.102 kb on + strand, within SMa0369 at 198.103 kb on - strand, within SMa0369 at 198.115 kb on + strand, within SMa0369 at 198.118 kb on - strand, within SMa0369 at 198.170 kb on + strand at 198.171 kb on - strand at 198.220 kb on + strand at 198.256 kb on - strand at 198.256 kb on - strand at 198.289 kb on + strand at 198.325 kb on + strand at 198.326 kb on - strand at 198.326 kb on - strand at 198.423 kb on + strand at 198.423 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.765 kb on - strand at 198.846 kb on + strand at 198.877 kb on + strand at 198.909 kb on + strand at 198.909 kb on + strand at 198.910 kb on - strand at 198.910 kb on - strand at 198.917 kb on + strand at 198.917 kb on + strand at 198.918 kb on - strand at 198.920 kb on + strand at 199.060 kb on + strand at 199.061 kb on - strand at 199.061 kb on - strand at 199.061 kb on - strand at 199.085 kb on + strand at 199.086 kb on - strand at 199.100 kb on - strand at 199.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 196,927 + -1.7 197,065 - SMa0367 0.17 +0.3 197,199 + SMa0367 0.32 +0.5 197,199 + SMa0367 0.32 -0.1 197,199 + SMa0367 0.32 +0.4 197,200 - SMa0367 0.32 +2.3 197,315 + SMa0367 0.45 -1.7 197,492 + SMa0367 0.65 +0.1 197,537 + SMa0367 0.70 -1.3 197,718 - SMa0367 0.90 +0.2 197,723 - -1.6 197,909 + +1.4 198,090 + SMa0369 0.69 -0.9 198,102 + SMa0369 0.73 +0.1 198,103 - SMa0369 0.74 -1.6 198,115 + SMa0369 0.78 -0.4 198,118 - SMa0369 0.79 -1.1 198,170 + -0.8 198,171 - +0.0 198,220 + -1.6 198,256 - -1.8 198,256 - -2.8 198,289 + +0.6 198,325 + -0.3 198,326 - -1.2 198,326 - +1.0 198,423 + -1.0 198,423 + -0.5 198,764 + +0.1 198,764 + +0.2 198,764 + -0.2 198,764 + -0.7 198,765 - -0.8 198,846 + -0.3 198,877 + +0.9 198,909 + -1.9 198,909 + -1.3 198,910 - +0.6 198,910 - -1.3 198,917 + -1.1 198,917 + -0.6 198,918 - +0.2 198,920 + +1.5 199,060 + -1.7 199,061 - +0.1 199,061 - -0.3 199,061 - -2.7 199,085 + -1.9 199,086 - -2.5 199,100 - +0.8 199,100 - -1.3
Or see this region's nucleotide sequence