Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21519 and SM_b21520 overlap by 4 nucleotides SM_b21520 and SM_b21521 overlap by 11 nucleotides SM_b21521 and SM_b21522 are separated by 392 nucleotides
SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611
_b21519
SM_b21520: SM_b21520 - two-component response regulator protein, at 1,444,608 to 1,445,267
_b21520
SM_b21521: SM_b21521 - hypothetical protein, at 1,445,257 to 1,445,715
_b21521
SM_b21522: SM_b21522 - cell division topological specificity factor MinE, at 1,446,108 to 1,446,371
_b21522
Position (kb)
1444
1445
1446 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1443.691 kb on + strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1444.054 kb on + strand, within SM_b21519 at 1444.054 kb on + strand, within SM_b21519 at 1444.055 kb on - strand, within SM_b21519 at 1444.055 kb on - strand, within SM_b21519 at 1444.328 kb on + strand, within SM_b21519 at 1444.329 kb on - strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.359 kb on + strand, within SM_b21519 at 1444.360 kb on - strand, within SM_b21519 at 1444.360 kb on - strand, within SM_b21519 at 1444.428 kb on + strand, within SM_b21519 at 1444.476 kb on - strand at 1444.506 kb on + strand at 1444.915 kb on - strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.984 kb on - strand, within SM_b21520 at 1444.984 kb on - strand, within SM_b21520 at 1445.642 kb on + strand, within SM_b21521 at 1445.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,443,691 + SM_b21519 0.37 +2.7 1,443,692 - SM_b21519 0.38 -2.8 1,443,692 - SM_b21519 0.38 +0.9 1,443,692 - SM_b21519 0.38 -1.6 1,444,054 + SM_b21519 0.62 -0.1 1,444,054 + SM_b21519 0.62 -2.3 1,444,055 - SM_b21519 0.62 +0.2 1,444,055 - SM_b21519 0.62 +0.2 1,444,328 + SM_b21519 0.81 +1.2 1,444,329 - SM_b21519 0.81 -0.5 1,444,334 + SM_b21519 0.81 -0.0 1,444,334 + SM_b21519 0.81 -0.4 1,444,334 + SM_b21519 0.81 -0.1 1,444,335 - SM_b21519 0.81 +1.6 1,444,335 - SM_b21519 0.81 +0.3 1,444,335 - SM_b21519 0.81 -2.7 1,444,336 + SM_b21519 0.81 +0.7 1,444,336 + SM_b21519 0.81 +1.8 1,444,336 + SM_b21519 0.81 +0.4 1,444,359 + SM_b21519 0.83 -0.9 1,444,360 - SM_b21519 0.83 -0.2 1,444,360 - SM_b21519 0.83 -1.0 1,444,428 + SM_b21519 0.88 -0.0 1,444,476 - +0.7 1,444,506 + +1.0 1,444,915 - SM_b21520 0.47 +1.7 1,444,983 + SM_b21520 0.57 -2.2 1,444,983 + -0.6 1,444,983 + SM_b21520 0.57 -0.0 1,444,983 + SM_b21520 0.57 -1.8 1,444,983 + SM_b21520 0.57 +2.7 1,444,983 + SM_b21520 0.57 -0.5 1,444,984 - SM_b21520 0.57 -2.0 1,444,984 - SM_b21520 0.57 +1.5 1,445,642 + SM_b21521 0.84 +1.2 1,445,737 + -1.0
Or see this region's nucleotide sequence